Wan Liyun, Wu Yanshan, Huang Jiaquan, Dai Xiaofeng, Lei Yong, Yan Liying, Jiang Huifang, Zhang Juncheng, Varshney Rajeev K, Liao Boshou
Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Wuhan, China,
Funct Integr Genomics. 2014 Sep;14(3):467-77. doi: 10.1007/s10142-014-0381-4. Epub 2014 Jun 6.
Ethylene-responsive factor (ERF) play an important role in regulating gene expression in plant development and response to stresses. In peanuts (Arachis hypogaea L.), which produce flowers aerially and pods underground, only a few ERF genes have been identified so far. This study identifies 63 ERF unigenes from 247,313 peanut EST sequences available in the NCBI database. The phylogeny, gene structures, and putative conserved motifs in the peanut ERF proteins were analysed. Comparative analysis revealed the absence of two subgroups (A1 and A3) of the ERF family in peanuts; only 10 subgroups were identified in peanuts compared to 12 subgroups in Arabidopsis and soybeans. AP2/ERF domains were found to be conserved among peanuts, Arabidopsis, and soybeans. Outside the AP2/ERF domain, many soybean-specific conserved motifs were also detected in peanuts. The expression analysis of ERF family genes representing each clade revealed differential expression patterns in response to biotic and abiotic stresses. Overexpression of AhERF008 influenced the root gravity of Arabidopsis, whereas overexpression of AhERF019 enhanced tolerance to drought, heat, and salt stresses in Arabidopsis. The information generated in this study will be helpful to further investigate the function of ERFs in plant development and stress response.
乙烯响应因子(ERF)在调节植物发育和应对胁迫过程中的基因表达方面发挥着重要作用。在花生(Arachis hypogaea L.)中,花生地上开花、地下结荚,目前仅鉴定出少数ERF基因。本研究从NCBI数据库中247,313条花生EST序列中鉴定出63个ERF单基因。分析了花生ERF蛋白的系统发育、基因结构和假定的保守基序。比较分析表明,花生中缺少ERF家族的两个亚组(A1和A3);与拟南芥和大豆中的12个亚组相比,花生中仅鉴定出10个亚组。发现AP2/ERF结构域在花生、拟南芥和大豆中保守。在AP2/ERF结构域之外,在花生中还检测到许多大豆特有的保守基序。对代表每个分支的ERF家族基因的表达分析揭示了其在响应生物和非生物胁迫时的差异表达模式。AhERF008的过表达影响拟南芥的根重力,而AhERF019的过表达增强了拟南芥对干旱、高温和盐胁迫的耐受性。本研究产生的信息将有助于进一步研究ERF在植物发育和胁迫响应中的功能。