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根癌土壤杆菌T区域边界重复序列保守结构域的突变分析。

Mutational analysis of the conserved domains of a T-region border repeat of Agrobacterium tumefaciens.

作者信息

van Haaren M J, Sedee N J, de Boer H A, Schilperoort R A, Hooykaas P J

机构信息

Department of Plant Molecular Biology, Leiden University, Netherlands.

出版信息

Plant Mol Biol. 1989 Nov;13(5):523-31. doi: 10.1007/BF00027312.

DOI:10.1007/BF00027312
PMID:2491670
Abstract

Left- and right-border repeats, which surround the T-region, contain two conserved regions separated by 5 bp that are not conserved. At the onset of T-DNA processing virD-encoded proteins introduce a nick in the largest of these conserved regions (12 bp) at a specific position in the bottom strand between a guanine and thymine nucleotide [2, 33]. In this paper we describe the effect of several site-directed mutations in the right-border repeat on tumorigenicity of Agrobacterium in plants. Our data show that mutations introduced directly around the nick site do not seriously affect the tumorigenicity of Agrobacterium, whereas mutations in the right part of this 12 bp conserved region do so. Furthermore, it appeared that the second conserved region (5 bp) is also essential for border activity and that the distance between the two conserved regions is important to obtain optimal border activity.

摘要

围绕T区域的左右边界重复序列包含两个保守区域,它们被5个碱基对隔开,这5个碱基对并不保守。在T-DNA加工开始时,virD编码的蛋白质在底部链上一个特定位置的最大保守区域(12个碱基对)中,在鸟嘌呤和胸腺嘧啶核苷酸之间引入一个切口[2, 33]。在本文中,我们描述了右边界重复序列中几个定点突变对根癌土壤杆菌在植物中致瘤性的影响。我们的数据表明,直接在切口位点周围引入的突变不会严重影响根癌土壤杆菌的致瘤性,而在这个12个碱基对保守区域右侧部分的突变则会产生影响。此外,似乎第二个保守区域(5个碱基对)对边界活性也至关重要,并且两个保守区域之间的距离对于获得最佳边界活性很重要。

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Mutational analysis of the conserved domains of a T-region border repeat of Agrobacterium tumefaciens.根癌土壤杆菌T区域边界重复序列保守结构域的突变分析。
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2
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本文引用的文献

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Nucleotide sequence of the T-DNA region from theA grobacterium tumefaciens octopine Ti plasmid pTi15955.农杆菌 octopine Ti 质粒 pTi15955 的 T-DNA 区核苷酸序列。
Plant Mol Biol. 1983 Nov;2(6):335-50. doi: 10.1007/BF01578595.
2
Functional analysis of the Agrobacterium tumefaciens octopine Ti-plasmid left and right T-region border fragments.农杆菌 tumefaciens 胭脂碱 Ti 质粒左右 T 区边界片段的功能分析。
Plant Mol Biol. 1987 Jan;8(1):95-104. doi: 10.1007/BF00016438.
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Analysis of TR-DNA/plant junctions in the genome of a Convolvulus arvensis clone transformed by Agrobacterium rhizogenes strain A4.
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T-strand integration in maize protoplasts after codelivery of a T-DNA substrate and virulence genes.在共递送T-DNA底物和毒力基因后,T链在玉米原生质体中的整合。
Proc Natl Acad Sci U S A. 1997 Oct 14;94(21):11726-30. doi: 10.1073/pnas.94.21.11726.
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Frequent collinear long transfer of DNA inclusive of the whole binary vector during Agrobacterium-mediated transformation.在农杆菌介导的转化过程中,频繁发生包含整个二元载体的DNA共线性长片段转移。
Plant Mol Biol. 1997 Aug;34(6):913-22. doi: 10.1023/a:1005849303333.
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"Agrolistic" transformation of plant cells: integration of T-strands generated in planta.植物细胞的“农杆菌介导的基因转移整合”:植物体内产生的T链的整合
Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14978-83. doi: 10.1073/pnas.93.25.14978.
7
Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation.根癌土壤杆菌Ti质粒的VirD2蛋白对单链DNA的位点特异性切割与连接:与细菌接合的类比
Proc Natl Acad Sci U S A. 1993 Dec 15;90(24):11538-42. doi: 10.1073/pnas.90.24.11538.
8
Transformation of plant cells via Agrobacterium.通过农杆菌介导的植物细胞转化
Plant Mol Biol. 1989 Sep;13(3):327-36. doi: 10.1007/BF00025321.
9
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10
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Proc Natl Acad Sci U S A. 1991 Sep 1;88(17):7763-7. doi: 10.1073/pnas.88.17.7763.
分析农杆菌 A4 菌株转化的旋花基因组中的 TR-DNA/植物 junctions。
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Function of heterologous and pseudo border repeats in T region transfer via the octopine virulence system of Agrobacterium tumefaciens.通过根癌农杆菌的 octopine 毒性系统进行 T 区转移中外源和伪边界重复的功能。
Plant Mol Biol. 1988 Nov;11(6):773-81. doi: 10.1007/BF00019517.
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Science. 1987 Jan 30;235(4788):587-91. doi: 10.1126/science.235.4788.587.
6
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7
Agropine in "null-type" crown gall tumors: Evidence for generality of the opine concept.“无类型”冠瘿瘤中的农杆碱:阿朴碱概念通用性的证据。
Proc Natl Acad Sci U S A. 1980 May;77(5):2693-7. doi: 10.1073/pnas.77.5.2693.
8
Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid.过驱动,一种存在于根癌土壤杆菌致瘤质粒上的T-DNA转移增强子。
EMBO J. 1986 Jun;5(6):1137-42. doi: 10.1002/j.1460-2075.1986.tb04338.x.
9
Interactions between octopine and nopaline plasmids in Agrobacterium tumefaciens.根癌土壤杆菌中章鱼碱型与胭脂碱型质粒间的相互作用
J Bacteriol. 1980 Sep;143(3):1295-306. doi: 10.1128/jb.143.3.1295-1306.1980.
10
Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti.用于革兰氏阴性菌的广宿主范围DNA克隆系统:苜蓿根瘤菌基因文库的构建
Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347-51. doi: 10.1073/pnas.77.12.7347.