• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

加工假基因中的缺失在啮齿动物中积累的速度比在人类中更快。

Deletions in processed pseudogenes accumulate faster in rodents than in humans.

作者信息

Graur D, Shuali Y, Li W H

机构信息

Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel.

出版信息

J Mol Evol. 1989 Apr;28(4):279-85. doi: 10.1007/BF02103423.

DOI:10.1007/BF02103423
PMID:2499684
Abstract

The relative rates of point nucleotide substitution and accumulation of gap events (deletions and insertions) were calculated for 22 human and 30 rodent processed pseudogenes. Deletion events not only outnumbered insertions (the ratio being 7:1 and 3:1 for human and rodent pseudogenes, respectively), but also the total length of deletions was greater than that of insertions. Compared with their functional homologs, human processed pseudogenes were found to be shorter by about 1.2%, and rodent pseudogenes by about 2.3%. DNA loss from processed pseudogenes through deletion is estimated to be at least seven times faster in rodents than in humans. In comparison with the rate of point substitutions, the abridgment of pseudogenes during evolutionary times is a slow process that probably does not retard the rate of growth of the genome due to the proliferation of processed pseudogenes.

摘要

计算了22个人类和30个啮齿动物加工假基因的点核苷酸替换率和间隙事件(缺失和插入)的累积率。缺失事件不仅数量超过插入事件(人类和啮齿动物假基因的比例分别为7:1和3:1),而且缺失的总长度也大于插入的总长度。与它们的功能同源物相比,发现人类加工假基因短约1.2%,啮齿动物假基因短约2.3%。据估计,通过缺失导致的加工假基因的DNA丢失在啮齿动物中比在人类中至少快7倍。与点替换率相比,假基因在进化过程中的缩短是一个缓慢的过程,可能不会因为加工假基因的增殖而阻碍基因组的生长速度。

相似文献

1
Deletions in processed pseudogenes accumulate faster in rodents than in humans.加工假基因中的缺失在啮齿动物中积累的速度比在人类中更快。
J Mol Evol. 1989 Apr;28(4):279-85. doi: 10.1007/BF02103423.
2
Patterns and rates of indel evolution in processed pseudogenes from humans and murids.人类和鼠科动物加工假基因中插入缺失进化的模式与速率
Gene. 1997 Dec 31;205(1-2):191-202. doi: 10.1016/s0378-1119(97)00398-3.
3
The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment.人类和啮齿动物假基因中插入和缺失的大小分布表明了序列比对的对数空位罚分。
J Mol Evol. 1995 Apr;40(4):464-73. doi: 10.1007/BF00164032.
4
HOPPSIGEN: a database of human and mouse processed pseudogenes.HOPPSIGEN:人类和小鼠加工假基因数据库。
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D59-66. doi: 10.1093/nar/gki084.
5
Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes.从假基因推断人类基因组中的核苷酸替换、插入和缺失模式。
Nucleic Acids Res. 2003 Sep 15;31(18):5338-48. doi: 10.1093/nar/gkg745.
6
Genomic gigantism: DNA loss is slow in mountain grasshoppers.基因组巨大化:山区蝗虫的DNA丢失速度缓慢。
Mol Biol Evol. 2001 Feb;18(2):246-53. doi: 10.1093/oxfordjournals.molbev.a003798.
7
How many processed pseudogenes are accumulated in a gene family?一个基因家族中积累了多少个经过加工的假基因?
Genetics. 1985 Jun;110(2):345-64. doi: 10.1093/genetics/110.2.345.
8
Processed pseudogenes: characteristics and evolution.加工假基因:特征与进化
Annu Rev Genet. 1985;19:253-72. doi: 10.1146/annurev.ge.19.120185.001345.
9
Two closely related kappa variable region pseudogenes pose an evolutionary paradox.两个密切相关的κ轻链可变区假基因构成了一个进化悖论。
Immunogenetics. 1991;34(5):313-23. doi: 10.1007/BF00211995.
10
Human glyceraldehyde-3-phosphate dehydrogenase pseudogenes: molecular evolution and a possible mechanism for amplification.人类3-磷酸甘油醛脱氢酶假基因:分子进化及一种可能的扩增机制
Biochem Genet. 1989 Aug;27(7-8):439-50. doi: 10.1007/BF02399673.

引用本文的文献

1
Insertions and Deletions: Computational Methods, Evolutionary Dynamics, and Biological Applications.插入和缺失:计算方法、进化动态和生物应用。
Mol Biol Evol. 2024 Sep 4;41(9). doi: 10.1093/molbev/msae177.
2
The evolutionary dynamics that retain long neutral genomic sequences in face of indel deletion bias: a model and its application to human introns.在插入缺失删除偏向的情况下保留长的中性基因组序列的进化动态:一个模型及其在人类内含子中的应用。
Open Biol. 2022 Dec;12(12):220223. doi: 10.1098/rsob.220223. Epub 2022 Dec 14.
3
AliSim: A Fast and Versatile Phylogenetic Sequence Simulator for the Genomic Era.

本文引用的文献

1
Pseudogenes.假基因
Nature. 1980 Aug 28;286(5776):840-1. doi: 10.1038/286840a0.
2
The nucleotide sequence of a rabbit beta-globin pseudogene.兔β-珠蛋白假基因的核苷酸序列。
Cell. 1980 Sep;21(2):545-53. doi: 10.1016/0092-8674(80)90492-4.
3
The structure of a human alpha-globin pseudogene and its relationship to alpha-globin gene duplication.人类α-珠蛋白假基因的结构及其与α-珠蛋白基因重复的关系。
AliSim:基因组时代快速且通用的进化序列模拟器。
Mol Biol Evol. 2022 May 3;39(5). doi: 10.1093/molbev/msac092.
4
A Probabilistic Model for Indel Evolution: Differentiating Insertions from Deletions.一种插入/缺失进化的概率模型:区分插入和缺失。
Mol Biol Evol. 2021 Dec 9;38(12):5769-5781. doi: 10.1093/molbev/msab266.
5
Causes and Effects of Loss of Classical Nonhomologous End Joining Pathway in Parasitic Eukaryotes.寄生虫真核生物中经典非同源末端连接途径缺失的原因和影响。
mBio. 2019 Jul 16;10(4):e01541-19. doi: 10.1128/mBio.01541-19.
6
Beyond mRNA: The role of non-coding RNAs in normal and aberrant hematopoiesis.超越 mRNA:非编码 RNA 在正常和异常造血中的作用。
Mol Genet Metab. 2017 Nov;122(3):28-38. doi: 10.1016/j.ymgme.2017.07.008. Epub 2017 Jul 25.
7
Occurrence of mitochondrial CO1 pseudogenes in Neocalanus plumchrus (Crustacea: Copepoda): Hybridization indicated by recombined nuclear mitochondrial pseudogenes.新哲水蚤(甲壳纲:桡足类)中线粒体CO1假基因的出现:重组核线粒体假基因表明的杂交现象
PLoS One. 2017 Feb 23;12(2):e0172710. doi: 10.1371/journal.pone.0172710. eCollection 2017.
8
Evolution of Gene Duplication in Plants.植物中基因复制的进化
Plant Physiol. 2016 Aug;171(4):2294-316. doi: 10.1104/pp.16.00523. Epub 2016 Jun 10.
9
Diversification of genes encoding granule-bound starch synthase in monocots and dicots is marked by multiple genome-wide duplication events.单子叶植物和双子叶植物中编码颗粒结合型淀粉合成酶的基因多样化是由多个全基因组复制事件标记的。
PLoS One. 2012;7(1):e30088. doi: 10.1371/journal.pone.0030088. Epub 2012 Jan 23.
10
Sequence shortening in the rodent ancestor.啮齿动物祖先的序列缩短。
Genome Res. 2012 Mar;22(3):478-85. doi: 10.1101/gr.121897.111. Epub 2011 Nov 29.
Cell. 1980 Sep;21(2):537-44. doi: 10.1016/0092-8674(80)90491-2.
4
Two related pseudogenes are the result of a gene duplication in the goat beta-globin locus.两个相关的假基因是山羊β-珠蛋白基因座中基因复制的结果。
Cell. 1981 Oct;26(2 Pt 2):181-90. doi: 10.1016/0092-8674(81)90301-9.
5
Evolutionary history written in globin genes.书写在珠蛋白基因中的进化史。
Science. 1981 Oct 23;214(4519):426-7, 429. doi: 10.1126/science.7291984.
6
Pseudogenes as a paradigm of neutral evolution.假基因作为中性进化的范例。
Nature. 1981 Jul 16;292(5820):237-9. doi: 10.1038/292237a0.
7
Causes of more frequent deletions than insertions in mutations and protein evolution.突变和蛋白质进化中缺失比插入更频繁的原因。
Nature. 1981 Mar 12;290(5802):157-9. doi: 10.1038/290157a0.
8
Human metallothionein genes--primary structure of the metallothionein-II gene and a related processed gene.人类金属硫蛋白基因——金属硫蛋白-II基因及一个相关加工基因的一级结构
Nature. 1982 Oct 28;299(5886):797-802. doi: 10.1038/299797a0.
9
Patterns of nucleotide substitution in pseudogenes and functional genes.假基因和功能基因中的核苷酸替换模式。
J Mol Evol. 1982;18(5):360-9. doi: 10.1007/BF01733904.
10
Evidence that a human beta-tubulin pseudogene is derived from its corresponding mRNA.有证据表明人类β-微管蛋白假基因源自其相应的mRNA。
Nature. 1982 May 6;297(5861):83-4. doi: 10.1038/297083a0.