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利用同步辐射实现室温下的高分子序列晶体学。

Room-temperature macromolecular serial crystallography using synchrotron radiation.

机构信息

Center for Free Electron Laser Science, DESY , Notkestrasse 85, Hamburg 22607, Germany.

Center for Free Electron Laser Science, DESY , Notkestrasse 85, Hamburg 22607, Germany ; Institute of Biochemistry and Molecular Biology, University of Hamburg , Hamburg 22607, Germany.

出版信息

IUCrJ. 2014 May 30;1(Pt 4):204-12. doi: 10.1107/S2052252514010070. eCollection 2014 Jul 1.

Abstract

A new approach for collecting data from many hundreds of thousands of microcrystals using X-ray pulses from a free-electron laser has recently been developed. Referred to as serial crystallography, diffraction patterns are recorded at a constant rate as a suspension of protein crystals flows across the path of an X-ray beam. Events that by chance contain single-crystal diffraction patterns are retained, then indexed and merged to form a three-dimensional set of reflection intensities for structure determination. This approach relies upon several innovations: an intense X-ray beam; a fast detector system; a means to rapidly flow a suspension of crystals across the X-ray beam; and the computational infrastructure to process the large volume of data. Originally conceived for radiation-damage-free measurements with ultrafast X-ray pulses, the same methods can be employed with synchrotron radiation. As in powder diffraction, the averaging of thousands of observations per Bragg peak may improve the ratio of signal to noise of low-dose exposures. Here, it is shown that this paradigm can be implemented for room-temperature data collection using synchrotron radiation and exposure times of less than 3 ms. Using lysozyme microcrystals as a model system, over 40 000 single-crystal diffraction patterns were obtained and merged to produce a structural model that could be refined to 2.1 Å resolution. The resulting electron density is in excellent agreement with that obtained using standard X-ray data collection techniques. With further improvements the method is well suited for even shorter exposures at future and upgraded synchrotron radiation facilities that may deliver beams with 1000 times higher brightness than they currently produce.

摘要

最近开发了一种使用自由电子激光的 X 射线脉冲从数十万微晶中收集数据的新方法。这种方法称为连续晶体学,当蛋白质晶体悬浮液流过 X 射线束时,以恒定的速率记录衍射图案。保留偶然包含单晶衍射图案的事件,然后对其进行索引和合并,以形成用于结构确定的三维反射强度集。这种方法依赖于几个创新:高强度 X 射线束;快速探测器系统;快速将晶体悬浮液流过 X 射线束的方法;以及处理大量数据的计算基础设施。最初设想用于超快 X 射线脉冲的无辐射损伤测量,相同的方法也可以用于同步辐射。与粉末衍射一样,每个布拉格峰的数千个观测值的平均可以提高低剂量暴露的信噪比。在这里,表明可以使用同步辐射和小于 3ms 的曝光时间来实现该范例的室温数据收集。使用溶菌酶微晶作为模型系统,获得了超过 40000 个单晶衍射图案,并将其合并以产生可精修至 2.1Å分辨率的结构模型。得到的电子密度与使用标准 X 射线数据收集技术获得的电子密度非常吻合。通过进一步改进,该方法非常适合在未来和升级的同步辐射设施中进行更短的曝光,这些设施可能会提供比目前产生的光束亮 1000 倍的光束。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a530/4107920/f82333fee9e1/m-01-00204-fig1.jpg

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