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时空聚类与二次型的排列矩

Space Time Clustering and the Permutation Moments of Quadratic Form.

作者信息

Zhou Yi-Hui, Mayhew Gregory, Sun Zhibin, Xu Xiaolin, Zou Fei, Wright Fred A

机构信息

Department of Statistics, North Carolina State University, Raleigh, NC, U.S.A.

Department of Biostatistics, University of North Carolina, Chapel Hill, NC, U.S.A.

出版信息

Stat. 2013 Jan 1;2(1):292-302. doi: 10.1002/sta4.37.

DOI:10.1002/sta4.37
PMID:25210205
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4157666/
Abstract

The Mantel and Knox space-time clustering statistics are popular tools to establish transmissibility of a disease and detect outbreaks. The most commonly used null distributional approximations may provide poor fits, and researchers often resort to direct sampling from the permutation distribution. However, the exact first four moments for these statistics are available, and Pearson distributional approximations are often effective. Thus, our first goal is to clarify the literature and to make these tools more widely available. In addition, by rewriting terms in the statistics we obtain the exact first four permutation moments for the most commonly used quadratic form statistics, which need not be positive definite. The extension of this work to quadratic forms greatly expands the utility of density approximations for these problems, including for high-dimensional applications, where the statistics must be extreme in order to exceed stringent testing thresholds. We demonstrate the methods using examples from the investigation of disease transmission in cattle, the association of a gene expression pathway with breast cancer survival, regional genetic association with cystic fibrosis lung disease, and hypothesis testing for smoothed local linear regression.

摘要

曼特尔(Mantel)和诺克斯(Knox)时空聚类统计是用于确定疾病传播性和检测疫情爆发的常用工具。最常用的零分布近似可能拟合效果不佳,研究人员常常求助于从排列分布中直接抽样。然而,这些统计量的确切前四阶矩是已知的,并且皮尔逊分布近似通常很有效。因此,我们的首要目标是澄清相关文献,并使这些工具更广泛地可用。此外,通过重写统计量中的项,我们得到了最常用的二次型统计量的确切前四个排列矩,这些二次型统计量不一定是正定的。将这项工作扩展到二次型极大地扩展了这些问题的密度近似的效用,包括在高维应用中,在高维应用中,统计量必须非常极端才能超过严格的检验阈值。我们用牛病传播调查、基因表达途径与乳腺癌生存的关联、囊性纤维化肺病的区域遗传关联以及平滑局部线性回归的假设检验等例子来演示这些方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/db1fc19547a2/sta40002-0292-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/07c1060e5cc0/sta40002-0292-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/4e4b00d28628/sta40002-0292-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/d186678e3d7e/sta40002-0292-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/db1fc19547a2/sta40002-0292-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/07c1060e5cc0/sta40002-0292-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/4e4b00d28628/sta40002-0292-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/d186678e3d7e/sta40002-0292-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8806/4508909/db1fc19547a2/sta40002-0292-f4.jpg

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2
Using the gene ontology to scan multilevel gene sets for associations in genome wide association studies.使用基因本体论扫描全基因组关联研究中多层次基因集的关联。
Genet Epidemiol. 2012 Jan;36(1):3-16. doi: 10.1002/gepi.20632. Epub 2011 Dec 7.
3
Rare-variant association testing for sequencing data with the sequence kernel association test.基于序列核关联检验的测序数据罕见变异关联分析
Set-based differential covariance testing for genomics.
基于集合的基因组学差异协方差检验
Stat (Int Stat Inst). 2019;8(1):e235. doi: 10.1002/sta4.235. Epub 2019 Aug 6.
4
Pathway analysis for RNA-Seq data using a score-based approach.使用基于评分的方法对RNA测序数据进行通路分析。
Biometrics. 2016 Mar;72(1):165-74. doi: 10.1111/biom.12372. Epub 2015 Aug 10.
5
Hypothesis testing at the extremes: fast and robust association for high-throughput data.极端情况下的假设检验:高通量数据的快速稳健关联
Biostatistics. 2015 Jul;16(3):611-25. doi: 10.1093/biostatistics/kxv007. Epub 2015 Mar 18.
Am J Hum Genet. 2011 Jul 15;89(1):82-93. doi: 10.1016/j.ajhg.2011.05.029. Epub 2011 Jul 7.
4
Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.全基因组关联和连锁分析确定了囊性纤维化肺疾病严重程度的修饰基因座,位于 11p13 和 20q13.2。
Nat Genet. 2011 Jun;43(6):539-46. doi: 10.1038/ng.838. Epub 2011 May 22.
5
Efficient calculation of P-value and power for quadratic form statistics in multilocus association testing.多位点关联检验中二次型统计量的P值和检验效能的高效计算。
Ann Hum Genet. 2010 May;74(3):275-85. doi: 10.1111/j.1469-1809.2010.00574.x.
6
Review of software for space-time disease surveillance.时空疾病监测软件综述。
Int J Health Geogr. 2010 Mar 12;9:16. doi: 10.1186/1476-072X-9-16.
7
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Behav Genet. 2009 Sep;39(5):580-95. doi: 10.1007/s10519-009-9281-0. Epub 2009 Jun 14.
8
Space-time clustering of, and risk factors for, farmer-diagnosed winter dysentery in dairy cattle.奶牛场农民诊断的冬季痢疾的时空聚集性及危险因素
Can Vet J. 1989 Dec;30(12):948-51.
9
An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival.一种用于预测人类乳腺癌中p53状态的表达特征可预测突变状态、转录效应及患者生存率。
Proc Natl Acad Sci U S A. 2005 Sep 20;102(38):13550-5. doi: 10.1073/pnas.0506230102. Epub 2005 Sep 2.
10
The Knox method and other tests for space-time interaction.诺克斯方法及其他时空交互作用测试
Biometrics. 1999 Jun;55(2):544-52. doi: 10.1111/j.0006-341x.1999.00544.x.