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生物学中的实用主义转向:从生物分子到遗传内容操纵者。

Pragmatic turn in biology: From biological molecules to genetic content operators.

作者信息

Witzany Guenther

机构信息

Guenther Witzany, Telos-Philosophische Praxis, 5111 Buermoos, Austria.

出版信息

World J Biol Chem. 2014 Aug 26;5(3):279-85. doi: 10.4331/wjbc.v5.i3.279.

Abstract

Erwin Schrödinger's question "What is life?" received the answer for decades of "physics + chemistry". The concepts of Alain Turing and John von Neumann introduced a third term: "information". This led to the understanding of nucleic acid sequences as a natural code. Manfred Eigen adapted the concept of Hammings "sequence space". Similar to Hilbert space, in which every ontological entity could be defined by an unequivocal point in a mathematical axiomatic system, in the abstract "sequence space" concept each point represents a unique syntactic structure and the value of their separation represents their dissimilarity. In this concept molecular features of the genetic code evolve by means of self-organisation of matter. Biological selection determines the fittest types among varieties of replication errors of quasi-species. The quasi-species concept dominated evolution theory for many decades. In contrast to this, recent empirical data on the evolution of DNA and its forerunners, the RNA-world and viruses indicate cooperative agent-based interactions. Group behaviour of quasi-species consortia constitute de novo and arrange available genetic content for adaptational purposes within real-life contexts that determine epigenetic markings. This review focuses on some fundamental changes in biology, discarding its traditional status as a subdiscipline of physics and chemistry.

摘要

欧文·薛定谔提出的问题“生命是什么?”在几十年里得到的答案是“物理学 + 化学”。阿兰·图灵和约翰·冯·诺依曼的概念引入了第三个术语:“信息”。这使得人们将核酸序列理解为一种自然编码。曼弗雷德·艾根采用了汉明的“序列空间”概念。类似于希尔伯特空间,在希尔伯特空间中每个本体实体都可以由数学公理系统中的一个明确的点来定义,在抽象的“序列空间”概念中,每个点代表一个独特的句法结构,它们之间的距离值代表它们的差异程度。在这个概念中,遗传密码的分子特征通过物质的自组织而演变。生物选择在准种的各种复制错误类型中确定最适合的类型。几十年来,准种概念一直主导着进化理论。与此相反,最近关于DNA及其前身RNA世界和病毒进化的实证数据表明存在基于主体的合作相互作用。准种聚集体的群体行为重新构建并安排可用的遗传内容,以便在决定表观遗传标记的现实环境中用于适应目的。本综述聚焦于生物学中的一些根本性变化,摒弃了其作为物理和化学子学科的传统地位。

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