Institut Jacques Monod, CNRS, UMR 7592, CNRS/Université Paris Diderot-Paris 7, 15 rue H. Brion, Paris cedex 13 75205, France.
Evodevo. 2014 Sep 5;5:29. doi: 10.1186/2041-9139-5-29. eCollection 2014.
The Hes superfamily or Hes/Hey-related genes encompass a variety of metazoan-specific bHLH genes, with somewhat fuzzy phylogenetic relationships. Hes superfamily members are involved in a variety of major developmental mechanisms in metazoans, notably in neurogenesis and segmentation processes, in which they often act as direct effector genes of the Notch signaling pathway.
We have investigated the molecular and functional evolution of the Hes superfamily in metazoans using the lophotrochozoan Platynereis dumerilii as model. Our phylogenetic analyses of more than 200 Metazoan Hes/Hey-related genes revealed the presence of five families, three of them (Hes, Hey and Helt) being pan-metazoan. Those families were likely composed of a unique representative in the last common metazoan ancestor. The evolution of the Hes family was shaped by many independent lineage specific tandem duplication events. The expression patterns of 13 of the 15 Hes/Hey-related genes in Platynereis indicate a broad functional diversification. Nevertheless, a majority of these genes are involved in two crucial developmental processes in annelids: neurogenesis and segmentation, resembling functions highlighted in other animal models.
Combining phylogenetic and expression data, our study suggests an unusual evolutionary history for the Hes superfamily. An ancestral multifunctional annelid Hes gene may have undergone multiples rounds of duplication-degeneration-complementation processes in the lineage leading to Platynereis, each gene copies ensuring their maintenance in the genome by subfunctionalisation. Similar but independent waves of duplications are at the origin of the multiplicity of Hes genes in other metazoan lineages.
Hes 超家族或 Hes/Hey 相关基因包含各种后生动物特异性 bHLH 基因,其系统发育关系有些模糊。Hes 超家族成员参与后生动物的各种主要发育机制,特别是在神经发生和分节过程中,它们通常作为 Notch 信号通路的直接效应基因发挥作用。
我们使用环节动物 Platynereis dumerilii 作为模型,研究了后生动物 Hes 超家族的分子和功能进化。我们对超过 200 个后生动物 Hes/Hey 相关基因的系统发育分析揭示了存在五个家族,其中三个家族(Hes、Hey 和 Helt)是泛后生动物的。这些家族可能在最后一个共同后生动物祖先中由一个独特的代表组成。Hes 家族的进化受到许多独立谱系特异性串联重复事件的影响。15 个 Hes/Hey 相关基因中的 13 个在 Platynereis 中的表达模式表明其功能广泛多样化。然而,这些基因中的大多数参与环节动物的两个关键发育过程:神经发生和分节,类似于在其他动物模型中强调的功能。
结合系统发育和表达数据,我们的研究表明 Hes 超家族具有不寻常的进化历史。在导致 Platynereis 的谱系中,一个古老的多功能环节动物 Hes 基因可能经历了多次复制-退化-互补过程,每个基因副本通过亚功能化确保其在基因组中的维持。类似但独立的重复波是其他后生动物谱系中众多 Hes 基因的起源。