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高温环境下的染色质结构与动态变化:嗜热古菌的结构蛋白与DNA拓扑异构酶

Chromatin structure and dynamics in hot environments: architectural proteins and DNA topoisomerases of thermophilic archaea.

作者信息

Visone Valeria, Vettone Antonella, Serpe Mario, Valenti Anna, Perugino Giuseppe, Rossi Mosè, Ciaramella Maria

机构信息

Institute of Biosciences and Bioresources, National Research Council of Italy, Naples 80131, Italy.

出版信息

Int J Mol Sci. 2014 Sep 25;15(9):17162-87. doi: 10.3390/ijms150917162.

DOI:10.3390/ijms150917162
PMID:25257534
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4200833/
Abstract

In all organisms of the three living domains (Bacteria, Archaea, Eucarya) chromosome-associated proteins play a key role in genome functional organization. They not only compact and shape the genome structure, but also regulate its dynamics, which is essential to allow complex genome functions. Elucidation of chromatin composition and regulation is a critical issue in biology, because of the intimate connection of chromatin with all the essential information processes (transcription, replication, recombination, and repair). Chromatin proteins include architectural proteins and DNA topoisomerases, which regulate genome structure and remodelling at two hierarchical levels. This review is focussed on architectural proteins and topoisomerases from hyperthermophilic Archaea. In these organisms, which live at high environmental temperature (>80 °C <113 °C), chromatin proteins and modulation of the DNA secondary structure are concerned with the problem of DNA stabilization against heat denaturation while maintaining its metabolic activity.

摘要

在三个生命域(细菌、古菌、真核生物)的所有生物体中,与染色体相关的蛋白质在基因组功能组织中发挥着关键作用。它们不仅使基因组结构紧凑并塑造其形状,还调节其动态变化,这对于实现复杂的基因组功能至关重要。由于染色质与所有基本信息过程(转录、复制、重组和修复)密切相关,阐明染色质的组成和调控是生物学中的一个关键问题。染色质蛋白包括结构蛋白和DNA拓扑异构酶,它们在两个层次水平上调节基因组结构和重塑。本综述聚焦于嗜热古菌的结构蛋白和拓扑异构酶。在这些生活在高温环境(>80°C <113°C)中的生物体中,染色质蛋白和DNA二级结构的调节涉及到在维持DNA代谢活性的同时防止其热变性的DNA稳定问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/7b35dc74cf74/ijms-15-17162-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/e08f21ecbebb/ijms-15-17162-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/1403ce2c368a/ijms-15-17162-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/37553812559a/ijms-15-17162-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/7b35dc74cf74/ijms-15-17162-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/e08f21ecbebb/ijms-15-17162-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/1403ce2c368a/ijms-15-17162-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/37553812559a/ijms-15-17162-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee3b/4200833/7b35dc74cf74/ijms-15-17162-g004.jpg

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本文引用的文献

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Extremophiles. 2014 Sep;18(5):895-904. doi: 10.1007/s00792-014-0662-9. Epub 2014 Aug 8.
2
ATR mediates a checkpoint at the nuclear envelope in response to mechanical stress.ATR在响应机械应力时介导核膜处的检查点。
Cell. 2014 Jul 31;158(3):633-46. doi: 10.1016/j.cell.2014.05.046.
3
Reverse gyrase--recent advances and current mechanistic understanding of positive DNA supercoiling.
Acta Naturae. 2021 Jan-Mar;13(1):59-75. doi: 10.32607/actanaturae.11058.
4
High expression of TOP2A in hepatocellular carcinoma is associated with disease progression and poor prognosis.TOP2A在肝细胞癌中的高表达与疾病进展及不良预后相关。
Oncol Lett. 2020 Nov;20(5):232. doi: 10.3892/ol.2020.12095. Epub 2020 Sep 11.
5
Emerging views of genome organization in Archaea.古菌中基因组组织的新观点。
J Cell Sci. 2020 May 18;133(10):jcs243782. doi: 10.1242/jcs.243782.
6
The Role of Archaeal Chromatin in Transcription.古菌染色质在转录中的作用。
J Mol Biol. 2019 Sep 20;431(20):4103-4115. doi: 10.1016/j.jmb.2019.05.006. Epub 2019 May 11.
7
Structure and function of archaeal histones.古菌组蛋白的结构与功能。
PLoS Genet. 2018 Sep 13;14(9):e1007582. doi: 10.1371/journal.pgen.1007582. eCollection 2018 Sep.
8
Structure and Properties of DNA Molecules Over The Full Range of Biologically Relevant Supercoiling States.DNA 分子在全范围生物学相关超螺旋状态下的结构和性质。
Sci Rep. 2018 Apr 18;8(1):6163. doi: 10.1038/s41598-018-24499-5.
9
In vivo and in vitro protein imaging in thermophilic archaea by exploiting a novel protein tag.通过利用一种新型蛋白质标签对嗜热古菌进行体内和体外蛋白质成像。
PLoS One. 2017 Oct 3;12(10):e0185791. doi: 10.1371/journal.pone.0185791. eCollection 2017.
10
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Front Microbiol. 2017 Aug 14;8:1480. doi: 10.3389/fmicb.2017.01480. eCollection 2017.
反向回旋酶——DNA正向超螺旋的最新进展及当前机制理解
Nucleic Acids Res. 2014 Jul;42(13):8200-13. doi: 10.1093/nar/gku589. Epub 2014 Jul 10.
4
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J Biol Chem. 2014 Feb 7;289(6):3231-43. doi: 10.1074/jbc.M113.517649. Epub 2013 Dec 17.
5
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6
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7
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EMBO Rep. 2013 Aug;14(8):711-7. doi: 10.1038/embor.2013.94. Epub 2013 Jul 9.
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J Biol Chem. 2013 May 10;288(19):13728-40. doi: 10.1074/jbc.M113.452979. Epub 2013 Mar 25.