Standard Joseph, Jiang Yu, Yu Miao, Su Xiaoyu, Zhao Zhihui, Xu Jianteng, Chen Jie, King Brenee, Lu Lizhi, Tomich John, Baybutt Richard, Wang Weiqun
Department of Human Nutrition, Kansas State University, Manhattan, KS 66506.
Institute for Agri-food Standards and Testing Technology, Shanghai Academy of Agricultural Sciences, Shanghai, China 201403.
J Nutr Biochem. 2014 Dec;25(12):1317-23. doi: 10.1016/j.jnutbio.2014.07.010. Epub 2014 Sep 22.
Weight control through either dietary calorie restriction (DCR) or exercise has been associated with cancer prevention in animal models. However, the underlying mechanisms are not fully defined. Bioinformatics using genomics, proteomics and lipidomics was employed to elucidate the molecular targets of weight control in a mouse skin cancer model. SENCAR mice were randomly assigned into four groups for 10 weeks: ad-libitum-fed sedentary control, ad-libitum-fed exercise (AE), exercise but pair-fed isocaloric amount of control (PE) and 20% DCR. Two hours after topical TPA treatment, skin epidermis was analyzed by Affymetrix for gene expression, DIGE for proteomics and lipidomics for phospholipids. Body weights were significantly reduced in both DCR and PE but not AE mice versus the control. Among 39,000 transcripts, 411, 67 and 110 genes were significantly changed in DCR, PE and AE, respectively. The expression of genes relevant to PI3K-Akt and Ras-MAPK signaling was effectively reduced by DCR and PE but not AE as measured through GenMAPP software. Proteomics analysis identified ~120 proteins, with 27 proteins significantly changed by DCR, including up-regulated apolipoprotein A-1, a key antioxidant protein that decreases Ras-MAPK activity. Of the total 338 phospholipids analyzed by lipidomics, 57 decreased by PE including 5 phophatidylinositol species that serve as PI3K substrates. Although a full impact has not been determined yet, it appears that the reduction of both Ras-MAPK and PI3K-Akt signaling pathways is a cancer preventive target that has been consistently demonstrated by three bioinformatics approaches.
在动物模型中,通过饮食热量限制(DCR)或运动来控制体重与癌症预防有关。然而,其潜在机制尚未完全明确。利用基因组学、蛋白质组学和脂质组学的生物信息学方法,在小鼠皮肤癌模型中阐明体重控制的分子靶点。将SENCAR小鼠随机分为四组,为期10周:自由进食的久坐对照组、自由进食的运动组(AE)、运动但等热量配对喂食对照组(PE)和20% DCR组。局部涂抹TPA处理两小时后,用Affymetrix分析皮肤表皮的基因表达,用DIGE进行蛋白质组学分析,用脂质组学分析磷脂。与对照组相比,DCR组和PE组小鼠的体重显著降低,而AE组小鼠体重未降低。在39000个转录本中,DCR组、PE组和AE组分别有411、67和110个基因发生显著变化。通过GenMAPP软件检测发现,DCR组和PE组而非AE组有效降低了与PI3K-Akt和Ras-MAPK信号通路相关基因的表达。蛋白质组学分析鉴定出约120种蛋白质,其中27种蛋白质在DCR组发生显著变化,包括上调的载脂蛋白A-Ⅰ,这是一种关键的抗氧化蛋白,可以降低Ras-MAPK活性。脂质组学分析的338种磷脂中,PE组有57种减少,其中包括5种作为PI3K底物的磷脂酰肌醇。虽然尚未确定其全部影响,但似乎Ras-MAPK和PI3K-Akt信号通路的减少是一个癌症预防靶点,这已通过三种生物信息学方法得到一致证明。