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进化改变了二氢叶酸还原酶的酶促反应坐标。

Evolution alters the enzymatic reaction coordinate of dihydrofolate reductase.

作者信息

Masterson Jean E, Schwartz Steven D

机构信息

Department of Chemistry and Biochemistry, University of Arizona , 1306 East University Boulevard, Tucson, Arizona 85721, United States.

出版信息

J Phys Chem B. 2015 Jan 22;119(3):989-96. doi: 10.1021/jp506373q. Epub 2014 Nov 13.

Abstract

How evolution has affected enzyme function is a topic of great interest in the field of biophysical chemistry. Evolutionary changes from Escherichia coli dihydrofolate reductase (ecDHFR) to human dihydrofolate reductase (hsDHFR) have resulted in increased catalytic efficiency and an altered dynamic landscape in the human enzyme. Here, we show that a subpicosecond protein motion is dynamically coupled to hydride transfer catalyzed by hsDHFR but not ecDHFR. This motion propagates through residues that correspond to mutational events along the evolutionary path from ecDHFR to hsDHFR. We observe an increase in the variability of the transition states, reactive conformations, and times of barrier crossing in the human system. In the hsDHFR active site, we detect structural changes that have enabled the coupling of fast protein dynamics to the reaction coordinate. These results indicate a shift in the DHFR family to a form of catalysis that incorporates rapid protein dynamics and a concomitant shift to a more flexible path through reactive phase space.

摘要

进化如何影响酶的功能是生物物理化学领域一个备受关注的话题。从大肠杆菌二氢叶酸还原酶(ecDHFR)到人类二氢叶酸还原酶(hsDHFR)的进化变化导致了人类酶催化效率的提高和动态格局的改变。在这里,我们表明,亚皮秒级的蛋白质运动与hsDHFR催化的氢化物转移动态偶联,而与ecDHFR无关。这种运动通过沿着从ecDHFR到hsDHFR的进化路径对应于突变事件的残基传播。我们观察到人类系统中过渡态、反应性构象和越过势垒时间的变异性增加。在hsDHFR活性位点,我们检测到结构变化,这些变化使得快速蛋白质动力学与反应坐标得以偶联。这些结果表明,DHFR家族向一种结合快速蛋白质动力学的催化形式转变,并随之向通过反应相空间的更灵活路径转变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b421/4306496/a0c539ecc594/jp-2014-06373q_0002.jpg

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