从赫氏颗石藻水华中分离出的海洋细菌玫瑰杆菌属菌株CB2047的基因组序列草图
Draft Genome Sequence of Sulfitobacter sp. CB2047, a Member of the Roseobacter Clade of Marine Bacteria, Isolated from an Emiliania huxleyi Bloom.
作者信息
Ankrah Nana Y D, Lane Thomas, Budinoff Charles R, Hadden Mary K, Buchan Alison
机构信息
Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.
出版信息
Genome Announc. 2014 Nov 6;2(6):e01125-14. doi: 10.1128/genomeA.01125-14.
Abstract
We announce the draft genome sequence of Sulfitobacter sp. strain CB2047, a marine bacterium of the Roseobacter clade, isolated from a phytoplankton bloom. The genome encodes pathways for the catabolism of aromatic compounds as well as transformations of carbon monoxide and sulfur species. The strain also encodes a prophage as well as the gene transfer agent (GTA), both of which are prevalent among members of the Rhodobacterales order.
摘要
我们公布了硫杆菌属菌株CB2047的基因组序列草图，该菌株是从一次浮游植物大量繁殖中分离出的玫瑰杆菌纲海洋细菌。该基因组编码了芳香族化合物的分解代谢途径以及一氧化碳和硫物种的转化途径。该菌株还编码一种前噬菌体以及基因转移因子（GTA），这两者在红杆菌目成员中普遍存在。
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Nat Rev Microbiol. 2014 Oct;12(10):686-98. doi: 10.1038/nrmicro3326. Epub 2014 Aug 19.
2
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3
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ISME J. 2014 May;8(5):1089-100. doi: 10.1038/ismej.2013.216. Epub 2013 Dec 5.
4
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6
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Appl Environ Microbiol. 2001 Jul;67(7):2873-82. doi: 10.1128/AEM.67.7.2873-2882.2001.
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