索尔基因组学网络（SGN）——从基因型到表型再到育种。
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding.
作者信息
Fernandez-Pozo Noe, Menda Naama, Edwards Jeremy D, Saha Surya, Tecle Isaak Y, Strickler Susan R, Bombarely Aureliano, Fisher-York Thomas, Pujar Anuradha, Foerster Hartmut, Yan Aimin, Mueller Lukas A
机构信息
Boyce Thompson Institute for Plant Research, Ithaca, NY 14853, USA.
Dale Bumpers National Rice Research Center, Stuttgart, AR 72160, USA.
出版信息
Nucleic Acids Res. 2015 Jan;43(Database issue):D1036-41. doi: 10.1093/nar/gku1195. Epub 2014 Nov 26.
The Sol Genomics Network (SGN, http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts whole genome data for an increasing number of Solanaceae family members including tomato, potato, pepper, eggplant, tobacco and Nicotiana benthamiana. The database also stores loci and phenotype data, which researchers can upload and edit with user-friendly web interfaces. Tools such as BLAST, GBrowse and JBrowse for browsing genomes, expression and map data viewers, a locus community annotation system and a QTL analysis tools are available. A new tool was recently implemented to improve Virus-Induced Gene Silencing (VIGS) constructs called the SGN VIGS tool. With the growing genomic and phenotypic data in the database, SGN is now advancing to develop new web-based breeding tools and implement the code and database structure for other species or clade-specific databases.
索尔基因组网络（SGN，http://solgenomics.net）是一个网络门户，提供茄科及其近缘物种的基因组和表型数据以及分析工具。SGN保存了越来越多茄科成员的全基因组数据，包括番茄、马铃薯、辣椒、茄子、烟草和本氏烟草。该数据库还存储基因座和表型数据，研究人员可以通过用户友好的网络界面上传和编辑这些数据。提供了诸如用于浏览基因组的BLAST、GBrowse和JBrowse、表达和图谱数据查看器、基因座社区注释系统以及QTL分析工具等。最近实施了一种新工具，即SGN VIGS工具，以改进病毒诱导基因沉默（VIGS）构建体。随着数据库中基因组和表型数据的不断增加，SGN目前正在推进开发新的基于网络的育种工具，并为其他物种或特定类群的数据库实现代码和数据库结构。
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