Gu Longjiang, Si Weina, Zhao Lina, Yang Sihai, Zhang Xiaohui
State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, 210023, China.
Mol Genet Genomics. 2015 Apr;290(2):727-38. doi: 10.1007/s00438-014-0948-8. Epub 2014 Dec 5.
Extensive studies have focused on the largest class of disease resistance genes (nucleotide binding site-leucine-rich repeat, NBS-LRR) in various plants. However, no research on the dynamic evolution of these genes in domesticated species and their progenitors has been reported. Recently published genome sequences of bread wheat and its two ancestors provide a good opportunity for comparing NBS-encoding genes between ancestors and their progeny. Over 2000 NBS-encoding genes have been identified in bread wheat, which is the largest number having been reported so far. Compared with other grass species, its two progenitors also contained more NBS-encoding genes, indicating that there was an expansion of these genes in their common ancestor. Interestingly, the inherited relationships of NBS-LRR genes among the bread wheat and its two progenitors were ambiguous and only 3 % single-copy orthologues retained gene order in three-way genome comparisons of the three genomes. Lots of NBS-encoding genes present in the either ancestor could not be found in the bread wheat. These results indicated that NBS-LRR genes in bread wheat might have evolved rapidly through a rapid loss of ancestor genes.
大量研究聚焦于各种植物中最大一类抗病基因(核苷酸结合位点-富含亮氨酸重复序列,NBS-LRR)。然而,尚未有关于这些基因在驯化物种及其祖先中动态进化的研究报道。最近公布的面包小麦及其两个祖先的基因组序列为比较祖先及其后代中编码NBS的基因提供了一个很好的机会。在面包小麦中已鉴定出2000多个编码NBS的基因,这是迄今为止报道的数量最多的。与其他禾本科物种相比,其两个祖先也含有更多编码NBS的基因,表明这些基因在它们的共同祖先中发生了扩增。有趣的是,面包小麦及其两个祖先之间NBS-LRR基因的遗传关系不明确,在三个基因组的三方基因组比较中,只有3%的单拷贝直系同源基因保留了基因顺序。在面包小麦中找不到其任一祖先中存在的许多编码NBS的基因。这些结果表明,面包小麦中的NBS-LRR基因可能通过快速丢失祖先基因而迅速进化。