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Genomic analyses of bacterial porin-cytochrome gene clusters.

作者信息

Shi Liang, Fredrickson James K, Zachara John M

机构信息

Pacific Northwest National Laboratory Richland, WA, USA.

出版信息

Front Microbiol. 2014 Nov 26;5:657. doi: 10.3389/fmicb.2014.00657. eCollection 2014.


DOI:10.3389/fmicb.2014.00657
PMID:25505896
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4245776/
Abstract

The porin-cytochrome (Pcc) protein complex is responsible for trans-outer membrane electron transfer during extracellular reduction of Fe(III) by the dissimilatory metal-reducing bacterium Geobacter sulfurreducens PCA. The identified and characterized Pcc complex of G. sulfurreducens PCA consists of a porin-like outer-membrane protein, a periplasmic 8-heme c-type cytochrome (c-Cyt) and an outer-membrane 12-heme c-Cyt, and the genes encoding the Pcc proteins are clustered in the same regions of genome (i.e., the pcc gene clusters) of G. sulfurreducens PCA. A survey of additionally microbial genomes has identified the pcc gene clusters in all sequenced Geobacter spp. and other bacteria from six different phyla, including Anaeromyxobacter dehalogenans 2CP-1, A. dehalogenans 2CP-C, Anaeromyxobacter sp. K, Candidatus Kuenenia stuttgartiensis, Denitrovibrio acetiphilus DSM 12809, Desulfurispirillum indicum S5, Desulfurivibrio alkaliphilus AHT2, Desulfurobacterium thermolithotrophum DSM 11699, Desulfuromonas acetoxidans DSM 684, Ignavibacterium album JCM 16511, and Thermovibrio ammonificans HB-1. The numbers of genes in the pcc gene clusters vary, ranging from two to nine. Similar to the metal-reducing (Mtr) gene clusters of other Fe(III)-reducing bacteria, such as Shewanella spp., additional genes that encode putative c-Cyts with predicted cellular localizations at the cytoplasmic membrane, periplasm and outer membrane often associate with the pcc gene clusters. This suggests that the Pcc-associated c-Cyts may be part of the pathways for extracellular electron transfer reactions. The presence of pcc gene clusters in the microorganisms that do not reduce solid-phase Fe(III) and Mn(IV) oxides, such as D. alkaliphilus AHT2 and I. album JCM 16511, also suggests that some of the pcc gene clusters may be involved in extracellular electron transfer reactions with the substrates other than Fe(III) and Mn(IV) oxides.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6fb/4245776/b011ab6b5254/fmicb-05-00657-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6fb/4245776/954221ad92e8/fmicb-05-00657-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6fb/4245776/b011ab6b5254/fmicb-05-00657-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6fb/4245776/954221ad92e8/fmicb-05-00657-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6fb/4245776/b011ab6b5254/fmicb-05-00657-g0002.jpg

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本文引用的文献

[1]
A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA.

Environ Microbiol Rep. 2014-9-24

[2]
The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface.

FEBS Lett. 2014-4-18

[3]
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Mol Biol Evol. 2013-10-16

[4]
Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics.

Front Microbiol. 2013-9-12

[5]
Protein-protein interaction regulates the direction of catalysis and electron transfer in a redox enzyme complex.

J Am Chem Soc. 2013-7-8

[6]
The roles of outer membrane cytochromes of Shewanella and Geobacter in extracellular electron transfer.

Environ Microbiol Rep. 2009-6-12

[7]
Fe(3-x)Ti(x)O4 nanoparticles as tunable probes of microbial metal oxidation.

J Am Chem Soc. 2013-6-7

[8]
Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals.

Proc Natl Acad Sci U S A. 2013-3-28

[9]
Complete genome sequence of Thermovibrio ammonificans HB-1(T), a thermophilic, chemolithoautotrophic bacterium isolated from a deep-sea hydrothermal vent.

Stand Genomic Sci. 2012-10-10

[10]
Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens.

Microbiology (Reading). 2013-1-10

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