Kumari Sumita, Joshi Rohit, Singh Kushwant, Roy Suchismita, Tripathi Amit K, Singh Prabhjeet, Singla-Pareek Sneh L, Pareek Ashwani
Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.
Funct Integr Genomics. 2015 Jul;15(4):395-412. doi: 10.1007/s10142-014-0429-5. Epub 2014 Dec 19.
Cyclophilins are a set of ubiquitous proteins present in all subcellular compartments, involved in a wide variety of cellular processes. Comparative bioinformatics analysis of the rice and Arabidopsis genomes led us to identify novel putative cyclophilin gene family members in both the genomes not reported previously. We grouped cyclophilin members with similar molecular weight and subtypes together in the phylogenetic tree which indicated their co-evolution in rice and Arabidopsis. We also characterized a rice cyclophilin gene, OsCyp2-P (Os02g0121300), isolated from a salinity-tolerant landrace, Pokkali. Publicly available massively parallel signature sequencing (MPSS) and microarray data, besides our quantitative real time PCR (qRT-PCR) data suggest that transcript abundance of OsCyp2-P is regulated under different stress conditions in a developmental and organ specific manner. Ectopic expression of OsCyp2-P imparted multiple abiotic stress tolerance to transgenic tobacco plants as evidenced by higher root length, shoot length, chlorophyll content, and K(+)/Na(+) ratio under stress conditions. Transgenic plants also showed reduced lipid peroxidase content, electrolyte leakage, and superoxide content under stress conditions suggesting better ion homeostasis than WT plants. Localization studies confirmed that OsCyp2-P is localized in both cytosol and nucleus, indicating its possible interaction with several other proteins. The overall results suggest the explicit role of OsCyp2-P in bestowing multiple abiotic stress tolerance at the whole plant level. OsCyp2-P operates via reactive oxygen species (ROS) scavenging and ion homeostasis and thus is a promising candidate gene for enhancing multiple abiotic stress tolerance in crop plants.
亲环蛋白是一组普遍存在于所有亚细胞区室中的蛋白质,参与多种细胞过程。对水稻和拟南芥基因组进行的比较生物信息学分析,使我们在这两个基因组中鉴定出了先前未报道的新型假定亲环蛋白基因家族成员。我们将分子量和亚型相似的亲环蛋白成员在系统发育树中归为一组,这表明它们在水稻和拟南芥中共同进化。我们还对一个从耐盐地方品种Pokkali中分离出的水稻亲环蛋白基因OsCyp2-P(Os02g0121300)进行了表征。公开可用的大规模平行签名测序(MPSS)和微阵列数据,以及我们的定量实时PCR(qRT-PCR)数据表明,OsCyp2-P的转录本丰度在不同胁迫条件下以发育和器官特异性的方式受到调控。OsCyp2-P的异位表达赋予转基因烟草植株多种非生物胁迫耐受性,胁迫条件下根长、茎长、叶绿素含量和K(+)/Na(+)比值更高证明了这一点。转基因植株在胁迫条件下还表现出脂质过氧化物含量、电解质渗漏和超氧化物含量降低,表明其离子稳态优于野生型植株。定位研究证实OsCyp2-P定位于细胞质和细胞核中,表明它可能与其他几种蛋白质相互作用。总体结果表明OsCyp2-P在赋予全株水平多种非生物胁迫耐受性方面具有明确作用。OsCyp2-P通过清除活性氧(ROS)和维持离子稳态发挥作用,因此是增强作物多种非生物胁迫耐受性的一个有前景的候选基因。