Siegle Joshua H, Hale Gregory J, Newman Jonathan P, Voigts Jakob
Department of Brain and Cognitive Sciences, MIT, Cambridge, MA, United States.
Department of Brain and Cognitive Sciences, MIT, Cambridge, MA, United States.
Curr Opin Neurobiol. 2015 Jun;32:53-9. doi: 10.1016/j.conb.2014.11.004. Epub 2014 Dec 17.
One often-overlooked factor when selecting a platform for large-scale electrophysiology is whether or not a particular data acquisition system is 'open' or 'closed': that is, whether or not the system's schematics and source code are available to end users. Open systems have a reputation for being difficult to acquire, poorly documented, and hard to maintain. With the arrival of more powerful and compact integrated circuits, rapid prototyping services, and web-based tools for collaborative development, these stereotypes must be reconsidered. We discuss some of the reasons why multichannel extracellular electrophysiology could benefit from open-source approaches and describe examples of successful community-driven tool development within this field. In order to promote the adoption of open-source hardware and to reduce the need for redundant development efforts, we advocate a move toward standardized interfaces that connect each element of the data processing pipeline. This will give researchers the flexibility to modify their tools when necessary, while allowing them to continue to benefit from the high-quality products and expertise provided by commercial vendors.
在选择大规模电生理平台时,一个经常被忽视的因素是特定的数据采集系统是“开放”还是“封闭”:也就是说,系统的原理图和源代码是否可供终端用户使用。开放系统因难以获取、文档记录不完善和难以维护而声名狼藉。随着更强大、更紧凑的集成电路、快速原型制作服务以及基于网络的协作开发工具的出现,这些刻板印象必须重新审视。我们讨论了多通道细胞外电生理为何能从开源方法中受益的一些原因,并描述了该领域成功的社区驱动工具开发的例子。为了促进开源硬件的采用并减少冗余开发工作的需求,我们主张朝着连接数据处理管道每个元素的标准化接口发展。这将使研究人员在必要时能够灵活修改他们的工具,同时让他们继续受益于商业供应商提供的高质量产品和专业知识。