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代谢通量分析的方法与进展:一篇综述短文

Methods and advances in metabolic flux analysis: a mini-review.

作者信息

Antoniewicz Maciek R

机构信息

Department of Chemical and Biomolecular Engineering, Metabolic Engineering and Systems Biology Laboratory, University of Delaware, 150 Academy St, Newark, DE, 19716, USA,

出版信息

J Ind Microbiol Biotechnol. 2015 Mar;42(3):317-25. doi: 10.1007/s10295-015-1585-x. Epub 2015 Jan 23.

DOI:10.1007/s10295-015-1585-x
PMID:25613286
Abstract

Metabolic flux analysis (MFA) is one of the pillars of metabolic engineering. Over the past three decades, it has been widely used to quantify intracellular metabolic fluxes in both native (wild type) and engineered biological systems. Through MFA, changes in metabolic pathway fluxes are quantified that result from genetic and/or environmental interventions. This information, in turn, provides insights into the regulation of metabolic pathways and may suggest new targets for further metabolic engineering of the strains. In this mini-review, we discuss and classify the various methods of MFA that have been developed, which include stoichiometric MFA, (13)C metabolic flux analysis, isotopic non-stationary (13)C metabolic flux analysis, dynamic metabolic flux analysis, and (13)C dynamic metabolic flux analysis. For each method, we discuss key advantages and limitations and conclude by highlighting important recent advances in flux analysis approaches.

摘要

代谢通量分析(MFA)是代谢工程的支柱之一。在过去三十年中,它已被广泛用于量化天然(野生型)和工程生物系统中的细胞内代谢通量。通过MFA,可以量化由遗传和/或环境干预导致的代谢途径通量变化。反过来,这些信息有助于深入了解代谢途径的调控,并可能为菌株的进一步代谢工程提供新的靶点。在本综述中,我们讨论并分类了已开发的各种MFA方法,包括化学计量MFA、(13)C代谢通量分析、同位素非稳态(13)C代谢通量分析、动态代谢通量分析和(13)C动态代谢通量分析。对于每种方法,我们讨论了其关键优点和局限性,并通过强调通量分析方法的重要最新进展来进行总结。

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Integrated 13C-metabolic flux analysis of 14 parallel labeling experiments in Escherichia coli.大肠杆菌中14个平行标记实验的整合13C代谢通量分析
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CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics.CeCaFDB:一个用于13C通量组学探索的中心碳代谢通量分布的记录、可视化和比较分析的精选数据库。
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Isotopically nonstationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation.
增强型通量潜力分析将酶表达的变化与代谢通量联系起来。
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Parameter Estimation and Identifiability in Kinetic Flux Profiling Models of Metabolism.代谢动力学通量分析模型中的参数估计与可识别性
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