对狭义酿酒酵母复合体的基因组学见解。
Genomic insights into the Saccharomyces sensu stricto complex.
作者信息
Borneman Anthony R, Pretorius Isak S
机构信息
The Australian Wine Research Institute, Adelaide, South Australia 5064, Australia
Macquarie University, Sydney, New South Wales 2109, Australia.
出版信息
Genetics. 2015 Feb;199(2):281-91. doi: 10.1534/genetics.114.173633.
Abstract
The Saccharomyces sensu stricto group encompasses species ranging from the industrially ubiquitous yeast Saccharomyces cerevisiae to those that are confined to geographically limited environmental niches. The wealth of genomic data that are now available for the Saccharomyces genus is providing unprecedented insights into the genomic processes that can drive speciation and evolution, both in the natural environment and in response to human-driven selective forces during the historical "domestication" of these yeasts for baking, brewing, and winemaking.
摘要
狭义酿酒酵母属包含多种酵母，从在工业上广泛存在的酿酒酵母到那些局限于地理范围有限的生态位中的酵母。目前可获得的酿酒酵母属丰富的基因组数据，为驱动物种形成和进化的基因组过程提供了前所未有的见解，这些过程既发生在自然环境中，也发生在这些酵母在烘焙、酿造和酿酒的历史“驯化”过程中对人类驱动的选择压力的响应中。
相似文献
1
Genomic insights into the Saccharomyces sensu stricto complex.对狭义酿酒酵母复合体的基因组学见解。
Genetics. 2015 Feb;199(2):281-91. doi: 10.1534/genetics.114.173633.
2
Saccharomyces pastorianus: genomic insights inspiring innovation for industry.巴斯德毕赤酵母：基因组学见解为工业创新带来灵感
Yeast. 2015 Jan;32(1):17-27. doi: 10.1002/yea.3033. Epub 2014 Sep 23.
3
The potential of genetic engineering for improving brewing, wine-making and baking yeasts.基因工程在改良酿造酵母、酿酒酵母和烘焙酵母方面的潜力。
Appl Microbiol Biotechnol. 2001 Sep;56(5-6):577-88. doi: 10.1007/s002530100700.
4
The complex and dynamic genomes of industrial yeasts.工业酵母复杂且动态的基因组
FEMS Microbiol Lett. 2009 Apr;293(1):1-10. doi: 10.1111/j.1574-6968.2008.01480.x. Epub 2009 Jan 17.
5
Origins, evolution, domestication and diversity of Saccharomyces beer yeasts.啤酒酵母的起源、进化、驯化和多样性。
Curr Opin Biotechnol. 2018 Feb;49:148-155. doi: 10.1016/j.copbio.2017.08.005. Epub 2017 Sep 3.
6
Genotypic and phenotypic evolution of yeast interspecies hybrids during high-sugar fermentation.酵母种间杂种在高糖发酵过程中的基因型和表型进化。
Appl Microbiol Biotechnol. 2016 Jul;100(14):6331-6343. doi: 10.1007/s00253-016-7481-0. Epub 2016 Apr 13.
7
Interspecies hybridization and recombination in Saccharomyces wine yeasts.酿酒酵母中的种间杂交与重组
FEMS Yeast Res. 2008 Nov;8(7):996-1007. doi: 10.1111/j.1567-1364.2008.00369.x. Epub 2008 Mar 18.
8
Lager-brewing yeasts in the era of modern genetics.现代遗传学时代的拉格啤酒酵母。
FEMS Yeast Res. 2019 Nov 1;19(7). doi: 10.1093/femsyr/foz063.
9
Bread, beer and wine: yeast domestication in the Saccharomyces sensu stricto complex.面包、啤酒和葡萄酒：酿酒酵母属内的酵母驯化。
C R Biol. 2011 Mar;334(3):229-36. doi: 10.1016/j.crvi.2010.12.016. Epub 2011 Feb 1.
10
Engineering evolution to study speciation in yeasts.通过工程进化研究酵母的物种形成
Nature. 2003 Mar 6;422(6927):68-72. doi: 10.1038/nature01418.
引用本文的文献
1
A cross-species rescue by mating method to interrogate gene essentiality across the genus.通过交配方法进行跨物种拯救，以探究整个属的基因必需性。
bioRxiv. 2025 Jun 4:2025.06.02.657496. doi: 10.1101/2025.06.02.657496.
2
The evolution of thermal performance curves in response to rising temperatures across the model genus yeast.模型酵母属中热性能曲线随温度升高的演变。
Proc Natl Acad Sci U S A. 2025 May 27;122(21):e2423262122. doi: 10.1073/pnas.2423262122. Epub 2025 May 20.
3
Horizontal Transfer and Recombination Fuel Ty4 Retrotransposon Evolution in Saccharomyces.水平转移与重组推动酿酒酵母中Ty4反转录转座子的进化
Genome Biol Evol. 2025 Jan 6;17(1). doi: 10.1093/gbe/evaf004.
4
Hybrid adaptation is hampered by Haldane's sieve.杂种适应受到哈代-温伯格定律的阻碍。
Nat Commun. 2024 Nov 28;15(1):10319. doi: 10.1038/s41467-024-54105-4.
5
Evaluating the Genome-Based Average Nucleotide Identity Calculation for Identification of Twelve Yeast Species.评估基于基因组的平均核苷酸同一性计算用于十二种酵母菌种鉴定的方法
J Fungi (Basel). 2024 Sep 11;10(9):646. doi: 10.3390/jof10090646.
6
Conversion of polyploid and alloploid Saccharomyces sensu stricto strains to leu2 mutants by genome DNA editing.通过基因组 DNA 编辑将多倍体和异源多倍体酿酒酵母同义菌株转化为亮氨酸缺陷型突变体。
Appl Microbiol Biotechnol. 2024 Jul 12;108(1):416. doi: 10.1007/s00253-024-13242-y.
7
The relationship between cell density and cell count differs among yeast species.细胞密度与细胞计数之间的关系在不同酵母物种中有所不同。
MicroPubl Biol. 2024 May 23;2024. doi: 10.17912/micropub.biology.001215. eCollection 2024.
8
Domestication signatures in the non-conventional yeast .非常规酵母的驯化特征。
mSystems. 2024 Jan 23;9(1):e0105823. doi: 10.1128/msystems.01058-23. Epub 2023 Dec 12.
9
Integrated genomics and phenotype microarray analysis of Saccharomyces cerevisiae industrial strains for rice wine fermentation and recombinant protein production.酿酒酵母工业菌株的基因组整合和表型微阵列分析及其在米酒发酵和重组蛋白生产中的应用。
Microb Biotechnol. 2023 Nov;16(11):2161-2180. doi: 10.1111/1751-7915.14354. Epub 2023 Oct 13.
10
Single nucleotide polymorphisms associated with wine fermentation and adaptation to nitrogen limitation in wild and domesticated yeast strains.与葡萄酒发酵和适应氮限制相关的单核苷酸多态性在野生和驯化酵母菌株中。
Biol Res. 2023 Jul 29;56(1):43. doi: 10.1186/s40659-023-00453-2.
本文引用的文献
1
Evidence for a Far East Asian origin of lager beer yeast.支持拉格啤酒酵母起源于远东亚洲。
Curr Biol. 2014 May 19;24(10):R380-1. doi: 10.1016/j.cub.2014.04.031.
2
Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids.酿酒酵母 eubayanus 及其大发酵啤酒杂种的群体结构和网状进化。
Mol Ecol. 2014 Apr;23(8):2031-45. doi: 10.1111/mec.12702. Epub 2014 Apr 3.
3
Genome sequence of Saccharomyces carlsbergensis, the world's first pure culture lager yeast.世界上第一种纯培养拉格酵母——卡尔斯伯酵母的基因组序列。
G3 (Bethesda). 2014 Feb 27;4(5):783-93. doi: 10.1534/g3.113.010090.
4
A high-definition view of functional genetic variation from natural yeast genomes.来自天然酵母基因组的功能基因变异的高清视图。
Mol Biol Evol. 2014 Apr;31(4):872-88. doi: 10.1093/molbev/msu037. Epub 2014 Jan 14.
5
Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives.从酿酒酵母样品中分离出的与工业相关的酿酒酵母菌株M3707及其四个单倍体衍生物的基因组序列。
Genome Announc. 2013 Jun 27;1(3):e00323-13. doi: 10.1128/genomeA.00323-13.
6
Introducing a new breed of wine yeast: interspecific hybridisation between a commercial Saccharomyces cerevisiae wine yeast and Saccharomyces mikatae.引入一种新型葡萄酒酵母：商业酿酒酵母和米曲霉属酵母之间的种间杂交。
PLoS One. 2013 Apr 17;8(4):e62053. doi: 10.1371/journal.pone.0062053. Print 2013.
7
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.高质量的从头测序和酿酒酵母基因组组装。
BMC Genomics. 2013 Jan 31;14:69. doi: 10.1186/1471-2164-14-69.
8
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus.酵母进化遗传学的强大威力：酿酒酵母属的新基因组序列和菌株资源。
G3 (Bethesda). 2011 Jun;1(1):11-25. doi: 10.1534/g3.111.000273. Epub 2011 Jun 1.
9
Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments.对酿酒酵母泛基因组的分析揭示了一个存在于不同工业环境来源的多种酵母菌株中的拷贝数变异体库。
Genome Res. 2012 May;22(5):908-24. doi: 10.1101/gr.130310.111. Epub 2012 Feb 27.
10
Ecological success of a group of Saccharomyces cerevisiae/Saccharomyces kudriavzevii hybrids in the northern european wine-making environment.一组酿酒酵母/克鲁维酵母杂种在北欧葡萄酒酿造环境中的生态成功。
Appl Environ Microbiol. 2012 May;78(9):3256-65. doi: 10.1128/AEM.06752-11. Epub 2012 Feb 17.
Zotero 插件