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ISME J. 2015 Aug;9(8):1857-69. doi: 10.1038/ismej.2015.4. Epub 2015 Feb 6.
2
Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin.空间分辨采样揭示了弧后盆地上升热液羽流中的动态微生物群落。
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3
Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center.东劳扩张中心深海热液羽流中微生物功能的宏基因组解析。
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4
Spatially distinct, temporally stable microbial populations mediate biogeochemical cycling at and below the seafloor in hydrothermal vent fluids.在热液喷口流体中,空间上不同、时间上稳定的微生物种群介导着生物地球化学循环在海底及其以下的进行。
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Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes.硫循环将深海热液喷口的微生物组和生物地球化学联系起来。
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Energy landscapes shape microbial communities in hydrothermal systems on the Arctic Mid-Ocean Ridge.能量景观塑造了北极中洋脊热液系统中的微生物群落。
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Deep-Sea Hydrothermal Vent Viruses Compensate for Microbial Metabolism in Virus-Host Interactions.深海热液喷口病毒在病毒-宿主相互作用中补偿微生物代谢
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High-Abundance Heterotrophic Bacteria Inhabit the 85° E Hydrothermal Plume of the Explosive Volcanic Zone at Gakkel Ridge, Arctic Ocean.高丰度异养细菌栖息于北冰洋加克尔海岭火山爆发区85°E热液羽流中。
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Elevated heterotrophic activity in Guaymas Basin hydrothermal plumes influences deep-sea carbon cycling.瓜伊马斯海盆热液羽流中异养活性的升高影响深海碳循环。
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Mapping the microbial diversity associated with different geochemical regimes in the shallow-water hydrothermal vents of the Aeolian archipelago, Italy.绘制意大利埃奥利群岛浅水热液喷口不同地球化学状态下的微生物多样性图谱。
Front Microbiol. 2023 Aug 11;14:1134114. doi: 10.3389/fmicb.2023.1134114. eCollection 2023.
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Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes.硫循环将深海热液喷口的微生物组和生物地球化学联系起来。
ISME J. 2023 Aug;17(8):1194-1207. doi: 10.1038/s41396-023-01421-0. Epub 2023 May 13.
7
A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes.一种氢营养型硫单胞菌在深海含氧饱和热液羽流中全球广泛存在。
Nat Microbiol. 2023 Apr;8(4):651-665. doi: 10.1038/s41564-023-01342-w. Epub 2023 Mar 9.
8
Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes.硫氧化菌(SUP05)在海底热液羽流中的生态位分化。
ISME J. 2022 Jun;16(6):1479-1490. doi: 10.1038/s41396-022-01195-x. Epub 2022 Jan 26.
9
Hydrothermal plumes as hotspots for deep-ocean heterotrophic microbial biomass production.热液喷口是深海异养微生物生物量产生的热点。
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本文引用的文献

1
Sulfur oxidation genes in diverse deep-sea viruses.深海病毒中的硫氧化基因。
Science. 2014 May 16;344(6185):757-60. doi: 10.1126/science.1252229. Epub 2014 May 1.
2
Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents.微生物铁摄取作为一种从深海热液喷口分散铁的机制。
Nat Commun. 2014;5:3192. doi: 10.1038/ncomms4192.
3
Gene-centric approach to integrating environmental genomics and biogeochemical models.以基因为中心的方法来整合环境基因组学和生物地球化学模型。
Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1879-84. doi: 10.1073/pnas.1313713111. Epub 2014 Jan 21.
4
A metastable equilibrium model for the relative abundances of microbial phyla in a hot spring.温泉中微生物门属丰度的亚稳态平衡模型。
PLoS One. 2013 Sep 2;8(9):e72395. doi: 10.1371/journal.pone.0072395. eCollection 2013.
5
The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats.深海热液喷口羽流的微生物学:与海底和水柱生境的生态和生物地理联系。
Front Microbiol. 2013 May 21;4:124. doi: 10.3389/fmicb.2013.00124. eCollection 2013.
6
Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling.社区转录组组装揭示了有助于深海碳氮循环的微生物。
ISME J. 2013 Oct;7(10):1962-73. doi: 10.1038/ismej.2013.85. Epub 2013 May 23.
7
Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria.证据表明,广泛分布的深海硫磺氧化菌具有氢氧化和代谢可塑性。
Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):330-5. doi: 10.1073/pnas.1215340110. Epub 2012 Dec 20.
8
Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system.胡安·德富卡海脊热液系统中流体梯度上的微生物群落结构。
FEMS Microbiol Ecol. 2013 Feb;83(2):324-39. doi: 10.1111/j.1574-6941.2012.01478.x. Epub 2012 Sep 17.
9
Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade.从 SUP05/Arctic96BD-19 分支中分离出好氧硫氧化菌。
ISME J. 2013 Feb;7(2):452-5. doi: 10.1038/ismej.2012.78. Epub 2012 Aug 9.
10
Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume.基因组转录组学揭示了驱动深海热液羽流硝化作用的古菌种群。
ISME J. 2012 Dec;6(12):2269-79. doi: 10.1038/ismej.2012.64. Epub 2012 Jun 14.

预测深海微生物群落对热液喷口地球化学扰动的响应。

Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents.

作者信息

Reed Daniel C, Breier John A, Jiang Houshuo, Anantharaman Karthik, Klausmeier Christopher A, Toner Brandy M, Hancock Cathrine, Speer Kevin, Thurnherr Andreas M, Dick Gregory J

机构信息

Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA.

Department of Ocean Physics and Engineering, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.

出版信息

ISME J. 2015 Aug;9(8):1857-69. doi: 10.1038/ismej.2015.4. Epub 2015 Feb 6.

DOI:10.1038/ismej.2015.4
PMID:25658053
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4511942/
Abstract

Submarine hydrothermal vents perturb the deep-ocean microbiome by injecting reduced chemical species into the water column that act as an energy source for chemosynthetic organisms. These systems thus provide excellent natural laboratories for studying the response of microbial communities to shifts in marine geochemistry. The present study explores the processes that regulate coupled microbial-geochemical dynamics in hydrothermal plumes by means of a novel mathematical model, which combines thermodynamics, growth and reaction kinetics, and transport processes derived from a fluid dynamics model. Simulations of a plume located in the ABE vent field of the Lau basin were able to reproduce metagenomic observations well and demonstrated that the magnitude of primary production and rate of autotrophic growth are largely regulated by the energetics of metabolisms and the availability of electron donors, as opposed to kinetic parameters. Ambient seawater was the dominant source of microbes to the plume and sulphur oxidisers constituted almost 90% of the modelled community in the neutrally-buoyant plume. Data from drifters deployed in the region allowed the different time scales of metabolisms to be cast in a spatial context, which demonstrated spatial succession in the microbial community. While growth was shown to occur over distances of tens of kilometers, microbes persisted over hundreds of kilometers. Given that high-temperature hydrothermal systems are found less than 100 km apart on average, plumes may act as important vectors between different vent fields and other environments that are hospitable to similar organisms, such as oil spills and oxygen minimum zones.

摘要

海底热液喷口通过向水柱中注入还原态化学物质来扰动深海微生物群落,这些化学物质可作为化能合成生物的能量来源。因此,这些系统为研究微生物群落对海洋地球化学变化的响应提供了绝佳的天然实验室。本研究借助一个新颖的数学模型探索了调节热液羽流中微生物 - 地球化学耦合动力学的过程,该模型结合了热力学、生长和反应动力学以及源自流体动力学模型的输运过程。对位于劳盆地ABE喷口区的羽流进行的模拟能够很好地再现宏基因组观测结果,并表明初级生产力的大小和自养生长速率在很大程度上受代谢能量学和电子供体可用性的调节,而非动力学参数。周围海水是羽流中微生物的主要来源,在中性浮力羽流中,硫氧化菌几乎占模拟群落的90%。在该区域部署的漂流器数据使得能够在空间背景下呈现不同时间尺度的代谢情况,这表明微生物群落存在空间演替。虽然生长显示发生在数十公里的距离上,但微生物可在数百公里范围内持续存在。鉴于平均每100公里以内就能发现高温热液系统,羽流可能成为不同喷口区与其他适宜类似生物生存的环境(如石油泄漏区和海洋缺氧区)之间的重要载体。