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本文引用的文献

1
Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents.微生物铁摄取作为一种从深海热液喷口分散铁的机制。
Nat Commun. 2014;5:3192. doi: 10.1038/ncomms4192.
2
Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.单细胞技术助力深海 SAR11 栖海型的比较基因组学研究。
ISME J. 2014 Jul;8(7):1440-51. doi: 10.1038/ismej.2013.243. Epub 2014 Jan 23.
3
UPARSE: highly accurate OTU sequences from microbial amplicon reads.UPARSE:从微生物扩增子读取中获得高度准确的 OTU 序列。
Nat Methods. 2013 Oct;10(10):996-8. doi: 10.1038/nmeth.2604. Epub 2013 Aug 18.
4
Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean.在黑暗海洋的一个生物地球化学热点地区,硫氧化菌主导着碳固定。
ISME J. 2013 Dec;7(12):2349-60. doi: 10.1038/ismej.2013.113. Epub 2013 Jul 11.
5
Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume.天然深海烃羽流宏转录组中的新型烃单加氧酶基因。
Environ Microbiol. 2014 Jan;16(1):60-71. doi: 10.1111/1462-2920.12182. Epub 2013 Jul 4.
6
Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics.通过宏基因组学和宏转录组学揭示神秘 SAR324 的代谢灵活性。
Environ Microbiol. 2014 Jan;16(1):304-17. doi: 10.1111/1462-2920.12165. Epub 2013 Jun 30.
7
The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats.深海热液喷口羽流的微生物学:与海底和水柱生境的生态和生物地理联系。
Front Microbiol. 2013 May 21;4:124. doi: 10.3389/fmicb.2013.00124. eCollection 2013.
8
Low temperature geomicrobiology follows host rock composition along a geochemical gradient in lau basin.低温地球微生物学沿着劳盆地的地球化学梯度跟随主岩成分。
Front Microbiol. 2013 Mar 27;4:61. doi: 10.3389/fmicb.2013.00061. eCollection 2013.
9
Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria.证据表明,广泛分布的深海硫磺氧化菌具有氢氧化和代谢可塑性。
Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):330-5. doi: 10.1073/pnas.1215340110. Epub 2012 Dec 20.
10
Pole-to-pole biogeography of surface and deep marine bacterial communities.极区到极区的海洋表面和深海细菌群落的生物地理学。
Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17633-8. doi: 10.1073/pnas.1208160109. Epub 2012 Oct 8.

空间分辨采样揭示了弧后盆地上升热液羽流中的动态微生物群落。

Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin.

作者信息

Sheik Cody S, Anantharaman Karthik, Breier John A, Sylvan Jason B, Edwards Katrina J, Dick Gregory J

机构信息

Department of Earth and Environmental Sciences, Ann Arbor, MI, USA.

Woods Hole Oceanographic Institution, Woods Hole, MA, USA.

出版信息

ISME J. 2015 Jun;9(6):1434-45. doi: 10.1038/ismej.2014.228. Epub 2014 Dec 9.

DOI:10.1038/ismej.2014.228
PMID:25489728
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4438330/
Abstract

Within hydrothermal plumes, chemosynthetic processes and microbe-mineral interactions drive primary productivity in deep-ocean food webs and may influence transport of elements such as iron. However, the source of microorganisms in plumes and the factors governing how these communities assemble are poorly understood, in part due to lack of data from early stages of plume formation. In this study, we examined microbial community composition of rising hydrothermal plumes from five vent fields along the Eastern Lau Spreading Center. Seafloor and plume microbial communities were significantly dissimilar and shared few phylotypes. Plume communities were highly similar to each other with significant differences in community membership only between Kilo Moana and Mariner, two vents that are separated by extremes in depth, latitude and geochemistry. Systematic sampling of waters surrounding the vents revealed that species richness and phylogenetic diversity was typically highest near the vent orifice, implying mixing of microbial communities from the surrounding habitats. Above-plume background communities were primarily dominated by SAR11, SAR324 and MG-I Archaea, while SUP05, Sulfurovum, Sulfurimonas, SAR324 and Alteromonas were abundant in plume and near-bottom background communities. These results show that the ubiquitous water-column microorganisms populate plume communities, and that the composition of background seawater exerts primary influence on plume community composition, with secondary influence from geochemical and/or physical properties of vents. Many of these pervasive deep-ocean organisms are capable of lithotrophy, suggesting that they are poised to use inorganic electron donors encountered in hydrothermal plumes.

摘要

在热液羽流中,化学合成过程以及微生物与矿物质的相互作用驱动着深海食物网中的初级生产力,并且可能影响铁等元素的迁移。然而,羽流中微生物的来源以及控制这些群落如何组装的因素仍知之甚少,部分原因是缺乏羽流形成早期阶段的数据。在这项研究中,我们研究了沿东劳海脊扩张中心五个喷口区上升的热液羽流的微生物群落组成。海底和羽流微生物群落显著不同,共有很少的系统发育型。羽流群落彼此高度相似,仅在深度、纬度和地球化学差异极大的基洛莫阿和水手这两个喷口之间,群落成员存在显著差异。对喷口周围水体的系统采样显示,物种丰富度和系统发育多样性通常在喷口孔口附近最高,这意味着来自周围栖息地的微生物群落发生了混合。羽流上方的背景群落主要由SAR11、SAR324和MG-I古菌主导,而SUP05、硫杆菌属、硫单胞菌属、SAR324和交替单胞菌属在羽流和近底背景群落中含量丰富。这些结果表明,普遍存在的水柱微生物构成了羽流群落,背景海水的组成对羽流群落组成起主要影响,喷口的地球化学和/或物理性质起次要影响。许多这些广泛存在的深海生物能够进行化能无机营养,这表明它们准备利用热液羽流中遇到的无机电子供体。