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两种来自船蛆共生菌 Teredinibacter turnerae 的氧化还原蛋白的结构剖析。

Structural dissection of two redox proteins from the shipworm symbiont Teredinibacter turnerae.

机构信息

Astbury Centre for Structural Molecular Biology and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom.

Department of Chemistry, University of York, York YO10 5DD, United Kingdom.

出版信息

IUCrJ. 2024 Mar 1;11(Pt 2):260-274. doi: 10.1107/S2052252524001386.

Abstract

The discovery of lytic polysaccharide monooxygenases (LPMOs), a family of copper-dependent enzymes that play a major role in polysaccharide degradation, has revealed the importance of oxidoreductases in the biological utilization of biomass. In fungi, a range of redox proteins have been implicated as working in harness with LPMOs to bring about polysaccharide oxidation. In bacteria, less is known about the interplay between redox proteins and LPMOs, or how the interaction between the two contributes to polysaccharide degradation. We therefore set out to characterize two previously unstudied proteins from the shipworm symbiont Teredinibacter turnerae that were initially identified by the presence of carbohydrate binding domains appended to uncharacterized domains with probable redox functions. Here, X-ray crystal structures of several domains from these proteins are presented together with initial efforts to characterize their functions. The analysis suggests that the target proteins are unlikely to function as LPMO electron donors, raising new questions as to the potential redox functions that these large extracellular multi-haem-containing c-type cytochromes may perform in these bacteria.

摘要

溶菌多糖单加氧酶(LPMOs)的发现揭示了氧化还原酶在生物利用生物质中的重要性,它是一类依赖铜的酶,在多糖降解中起主要作用。在真菌中,已经有一系列的氧化还原蛋白被认为与 LPMOs 一起作用,从而实现多糖的氧化。在细菌中,关于氧化还原蛋白与 LPMOs 之间的相互作用,以及两者之间的相互作用如何有助于多糖降解,人们知之甚少。因此,我们着手研究来自船蛆共生菌 Teredinibacter turnerae 的两种以前未研究过的蛋白质,这些蛋白质最初是通过存在碳水化合物结合结构域与具有可能的氧化还原功能的未表征结构域附着而被鉴定出来的。本文呈现了这些蛋白质的几个结构域的 X 射线晶体结构,并初步尝试对其功能进行了表征。分析表明,这些靶蛋白不太可能作为 LPMO 的电子供体发挥作用,这就提出了一个新的问题,即这些大型细胞外多血红素 c 型细胞色素可能在这些细菌中发挥何种潜在的氧化还原功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d630/10916295/f08a5c4c5088/m-11-00260-fig1.jpg

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