Bakker Rembrandt, Tiesinga Paul, Kötter Rolf
Department of Neuroinformatics, Donders Institute for Brain, Cognition and Behavior, Radboud University Nijmegen, Nijmegen, Netherlands,
Neuroinformatics. 2015 Jul;13(3):353-66. doi: 10.1007/s12021-014-9258-x.
The Scalable Brain Atlas (SBA) is a collection of web services that provide unified access to a large collection of brain atlas templates for different species. Its main component is an atlas viewer that displays brain atlas data as a stack of slices in which stereotaxic coordinates and brain regions can be selected. These are subsequently used to launch web queries to resources that require coordinates or region names as input. It supports plugins which run inside the viewer and respond when a new slice, coordinate or region is selected. It contains 20 atlas templates in six species, and plugins to compute coordinate transformations, display anatomical connectivity and fiducial points, and retrieve properties, descriptions, definitions and 3d reconstructions of brain regions. The ambition of SBA is to provide a unified representation of all publicly available brain atlases directly in the web browser, while remaining a responsive and light weight resource that specializes in atlas comparisons, searches, coordinate transformations and interactive displays.
可扩展脑图谱(SBA)是一组网络服务,可提供对大量不同物种脑图谱模板的统一访问。其主要组件是一个图谱查看器,它将脑图谱数据显示为一系列切片,在这些切片中可以选择立体定向坐标和脑区。随后,这些被用于向需要坐标或区域名称作为输入的资源发起网络查询。它支持在查看器内运行的插件,并在选择新切片、坐标或区域时做出响应。它包含六个物种的20个图谱模板,以及用于计算坐标变换、显示解剖连接性和基准点,以及检索脑区属性、描述、定义和三维重建的插件。SBA的目标是在网络浏览器中直接提供所有公开可用脑图谱的统一表示,同时保持一个专注于图谱比较、搜索、坐标变换和交互式显示的响应迅速且轻量级的资源。