印度马尼卡兰地热温泉中细菌和古菌多样性的宏基因组评估。
Metagenomic evaluation of bacterial and archaeal diversity in the geothermal hot springs of manikaran, India.
作者信息
Bhatia Sonu, Batra Navneet, Pathak Ashish, Green Stefan J, Joshi Amit, Chauhan Ashvini
机构信息
Department of Biotechnology, GGDSD College, Chandigarh, India
School of the Environment, Florida A&M University, Tallahassee, Florida, USA.
出版信息
Genome Announc. 2015 Feb 19;3(1):e01544-14. doi: 10.1128/genomeA.01544-14.
Abstract
Bacterial and archaeal diversity in geothermal spring water were investigated using 16S rRNA gene amplicon metagenomic sequencing. This revealed the dominance of Firmicutes, Aquificae, and the Deinococcus-Thermus group in this thermophilic environment. A number of sequences remained taxonomically unresolved, indicating the presence of potentially novel microbes in this unique habitat.
摘要
利用16S rRNA基因扩增子宏基因组测序技术对温泉水中的细菌和古菌多样性进行了研究。结果表明，在这种嗜热环境中，厚壁菌门、产水菌门和嗜热放线菌-栖热菌菌群占主导地位。许多序列在分类学上仍未得到解析，这表明在这个独特的栖息地存在潜在的新型微生物。
相似文献
1
Metagenomic evaluation of bacterial and archaeal diversity in the geothermal hot springs of manikaran, India.印度马尼卡兰地热温泉中细菌和古菌多样性的宏基因组评估。
Genome Announc. 2015 Feb 19;3(1):e01544-14. doi: 10.1128/genomeA.01544-14.
2
Metagenomic analysis of bacterial and archaeal assemblages in the soil-mousse surrounding a geothermal spring.对地热泉周围土壤苔藓中细菌和古菌群落的宏基因组分析。
Genom Data. 2015 May 30;5:195-200. doi: 10.1016/j.gdata.2015.05.016. eCollection 2015 Sep.
3
Microbial Diversity of Terrestrial Geothermal Springs in Armenia and Nagorno-Karabakh: A Review.亚美尼亚和纳戈尔诺-卡拉巴赫陆地温泉的微生物多样性：综述
Microorganisms. 2021 Jul 9;9(7):1473. doi: 10.3390/microorganisms9071473.
4
Bacterial and archaeal diversities in Yunnan and Tibetan hot springs, China.中国云南和西藏温泉中的细菌和古菌多样性。
Environ Microbiol. 2013 Apr;15(4):1160-75. doi: 10.1111/1462-2920.12025. Epub 2012 Nov 6.
5
Metagenomic analysis of microbial community of an Amazonian geothermal spring in Peru.秘鲁亚马逊地热泉微生物群落的宏基因组分析。
Genom Data. 2016 Jun 26;9:63-6. doi: 10.1016/j.gdata.2016.06.013. eCollection 2016 Sep.
6
Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments.印度中部温泉的宏基因组分析揭示了烃降解嗜热菌以及在极端环境中生存所必需的途径。
Front Microbiol. 2017 Jan 5;7:2123. doi: 10.3389/fmicb.2016.02123. eCollection 2016.
7
Comparative metagenomic analyses of a high-altitude Himalayan geothermal spring revealed temperature-constrained habitat-specific microbial community and metabolic dynamics.对喜马拉雅高海拔地热泉的比较宏基因组分析揭示了受温度限制的特定栖息地微生物群落和代谢动态。
Arch Microbiol. 2019 Apr;201(3):377-388. doi: 10.1007/s00203-018-01616-6. Epub 2019 Jan 25.
8
Taxonomic and functional characteristics of microbial communities and their correlation with physicochemical properties of four geothermal springs in Odisha, India.印度奥里萨邦四个地热泉微生物群落的分类和功能特征及其与理化性质的相关性
Front Microbiol. 2015 Oct 26;6:1166. doi: 10.3389/fmicb.2015.01166. eCollection 2015.
9
Archaeal and bacterial diversity in two hot springs from geothermal regions in Bulgaria as demostrated by 16S rRNA and GH-57 genes.通过16S rRNA和GH-57基因证明的保加利亚地热区两个温泉中的古菌和细菌多样性。
Int Microbiol. 2015 Dec;18(4):217-23. doi: 10.2436/20.1501.01.253.
10
Investigation of Microbial Diversity in Geothermal Hot Springs in Unkeshwar, India, Based on 16S rRNA Amplicon Metagenome Sequencing.基于16S rRNA扩增子宏基因组测序对印度Unkeshwar地热温泉微生物多样性的研究
Genome Announc. 2016 Feb 25;4(1):e01766-15. doi: 10.1128/genomeA.01766-15.
引用本文的文献
1
Deciphering the microbial communities of alkaline hot spring in Panamik, Ladakh, India using a high-throughput sequencing approach.采用高通量测序方法解析印度拉达克帕米尔碱性热泉中的微生物群落。
Braz J Microbiol. 2024 Jun;55(2):1465-1476. doi: 10.1007/s42770-024-01346-6. Epub 2024 Apr 25.
2
Bacterial diversity in 110 thermal hot springs of Indian Himalayan Region (IHR).印度喜马拉雅地区（IHR）110个温泉中的细菌多样性。
3 Biotech. 2022 Sep;12(9):238. doi: 10.1007/s13205-022-03270-8. Epub 2022 Aug 21.
3
Bacterial diversity, physicochemical and geothermometry of South Asian hot springs.南亚温泉的细菌多样性、物理化学性质及地热测定
Curr Res Microb Sci. 2022 Mar 22;3:100125. doi: 10.1016/j.crmicr.2022.100125. eCollection 2022.
4
Taxonomically Characterized and Validated Bacterial Species Based on 16S rRNA Gene Sequences from India During the Last Decade.基于过去十年来自印度的16S rRNA基因序列进行分类表征和验证的细菌物种
Indian J Microbiol. 2020 Mar;60(1):54-61. doi: 10.1007/s12088-019-00845-7. Epub 2019 Dec 3.
5
Cellulolytic thermophilic microorganisms in white biotechnology: a review.纤维素分解嗜热微生物在白色生物技术中的应用：综述
Folia Microbiol (Praha). 2020 Feb;65(1):25-43. doi: 10.1007/s12223-019-00710-6. Epub 2019 May 17.
6
Diazotroph Community Characterization via a High-Throughput Amplicon Sequencing and Analysis Pipeline.通过高通量扩增子测序和分析管道对固氮菌群落进行特征描述。
Appl Environ Microbiol. 2018 Jan 31;84(4). doi: 10.1128/AEM.01512-17. Print 2018 Feb 15.
7
Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments.印度中部温泉的宏基因组分析揭示了烃降解嗜热菌以及在极端环境中生存所必需的途径。
Front Microbiol. 2017 Jan 5;7:2123. doi: 10.3389/fmicb.2016.02123. eCollection 2016.
8
Bacterial and archeal community composition in hot springs from Indo-Burma region, North-east India.印度东北部印缅地区温泉中的细菌和古细菌群落组成。
AMB Express. 2016 Dec;6(1):111. doi: 10.1186/s13568-016-0284-y. Epub 2016 Nov 10.
9
Metagenomic analysis of bacterial and archaeal assemblages in the soil-mousse surrounding a geothermal spring.对地热泉周围土壤苔藓中细菌和古菌群落的宏基因组分析。
Genom Data. 2015 May 30;5:195-200. doi: 10.1016/j.gdata.2015.05.016. eCollection 2015 Sep.
本文引用的文献
1
The female urinary microbiome: a comparison of women with and without urgency urinary incontinence.女性泌尿微生物群：有和没有急迫性尿失禁的女性的比较。
mBio. 2014 Jul 8;5(4):e01283-14. doi: 10.1128/mBio.01283-14.
2
Complete genome sequence of Pyrobaculum oguniense.奥贡嗜火杆菌的全基因组序列
Stand Genomic Sci. 2012 Jul 30;6(3):336-45. doi: 10.4056/sigs.2645906. Epub 2012 Jul 20.
3
High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ System for simplified amplicon library preparation.使用454测序和Fluidigm Access Array™ 系统进行高通量HLA基因分型，以简化扩增子文库制备。
Tissue Antigens. 2013 Mar;81(3):141-9. doi: 10.1111/tan.12071.
4
Bacterial and archaeal diversity in two hot spring microbial mats from the geothermal region of Tengchong, China.中国腾冲地热区两个温泉微生物垫中的细菌和古菌多样性。
Extremophiles. 2012 Jul;16(4):607-18. doi: 10.1007/s00792-012-0460-1. Epub 2012 May 24.
5
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.Illumina HiSeq 和 MiSeq 平台上的超高通量微生物群落分析。
ISME J. 2012 Aug;6(8):1621-4. doi: 10.1038/ismej.2012.8. Epub 2012 Mar 8.
6
Complete genome sequence of strain 1860, a crenarchaeon of the genus Pyrobaculum able to grow with various electron acceptors.一株能够以各种电子受体生长的 Pyrobaculum 属泉古菌 1860 菌株的全基因组序列。
J Bacteriol. 2012 Feb;194(3):727-8. doi: 10.1128/JB.06465-11.
7
Applications of β-gal-III isozyme from Bacillus coagulans RCS3, in lactose hydrolysis.凝结芽孢杆菌 RCS3 中的β-半乳糖苷酶 III 同工酶在乳糖水解中的应用。
Int J Biol Macromol. 2011 Dec 1;49(5):879-84. doi: 10.1016/j.ijbiomac.2011.08.004. Epub 2011 Aug 10.
8
Molecular characterization of the diversity and distribution of a thermal spring microbial community by using rRNA and metabolic genes.利用rRNA和代谢基因对温泉微生物群落的多样性和分布进行分子特征分析。
Appl Environ Microbiol. 2008 Aug;74(15):4910-22. doi: 10.1128/AEM.00233-08. Epub 2008 Jun 6.
9
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
Zotero 插件