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σ-空穴的特征与卤键的本质

Characteristics of a σ-Hole and the Nature of a Halogen Bond.

作者信息

Kolář Michal H, Deepa Palanisamy, Ajani Haresh, Pecina Adam, Hobza Pavel

机构信息

Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic.

出版信息

Top Curr Chem. 2015;359:1-25. doi: 10.1007/128_2014_606.

Abstract

The nature of halogen bonding in 128 complexes was investigated using advanced quantum mechanical calculations. First, isolated halogen donors were studied and their σ-holes were described in terms of size and magnitude. Later, both partners in the complex were considered and their interaction was described in terms of DFT-SAPT decomposition. The whole set of complexes under study was split into two categories on the basis of their stabilisation energy. The first subset with 38 complexes possesses stabilisation energies in the range 7-32 kcal/mol, while the second subset with 90 complexes has stabilisation energies smaller than 7 kcal/mol. The first subset is characterised by small intermolecular distances (less than 2.5 Å) and a significant contraction of van der Waals (vdW) distance (sum of vdW radii). Here the polarisation/electrostatic energy is dominant, mostly followed by induction and dispersion energies. The importance of induction energy reflects the charge-transfer character of the respective halogen bonds. Intermolecular distances in the second subset are large and the respective contraction of vdW distance upon the formation of a halogen bond is much smaller. Here the dispersion energy is mostly dominant, followed by polarisation and induction energies. Considering the whole set of complexes, we conclude that the characteristic features of their halogen bonds arise from the concerted action of polarisation and dispersion energies and neither of these energies can be considered as dominant. Finally, the magnitude of the σ-hole and DFT-SAPT stabilisation energy correlates only weakly within the whole set of complexes.

摘要

利用先进的量子力学计算方法研究了128个配合物中卤键的性质。首先,对孤立的卤素供体进行了研究,并根据大小和强度描述了它们的σ-空穴。随后,考虑了配合物中的两个部分,并根据密度泛函理论中的对称性适配微扰理论(DFT-SAPT)分解描述了它们之间的相互作用。根据稳定能,将所研究的整个配合物集分为两类。第一类包含38个配合物,其稳定能范围为7-32千卡/摩尔,而第二类包含90个配合物,其稳定能小于7千卡/摩尔。第一类的特征是分子间距离较小(小于2.5 Å),范德华(vdW)距离(vdW半径之和)显著收缩。在这里,极化/静电能占主导地位,其次主要是诱导能和色散能。诱导能的重要性反映了相应卤键的电荷转移特性。第二类中的分子间距离较大,形成卤键时vdW距离的相应收缩要小得多。在这里,色散能占主导地位,其次是极化能和诱导能。考虑到整个配合物集,我们得出结论,它们卤键的特征源于极化能和色散能的协同作用,这两种能量都不能被视为主导。最后,在整个配合物集中,σ-空穴的大小与DFT-SAPT稳定能之间的相关性较弱。

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