Suppr超能文献

欧洲生物信息学研究所搜索引擎：为来自欧洲分子生物学实验室-欧洲生物信息学研究所的生物数据提供搜索和检索功能。

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.

作者信息

Squizzato Silvano, Park Young Mi, Buso Nicola, Gur Tamer, Cowley Andrew, Li Weizhong, Uludag Mahmut, Pundir Sangya, Cham Jennifer A, McWilliam Hamish, Lopez Rodrigo

机构信息

European Bioinformatics Institute, EMBL Outstation, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, Cambridge, UK.

European Bioinformatics Institute, EMBL Outstation, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, Cambridge, UK

出版信息

Nucleic Acids Res. 2015 Jul 1;43(W1):W585-8. doi: 10.1093/nar/gkv316. Epub 2015 Apr 8.

DOI:10.1093/nar/gkv316
PMID:25855807
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4489232/
Abstract

The European Bioinformatics Institute (EMBL-EBI-https://www.ebi.ac.uk) provides free and unrestricted access to data across all major areas of biology and biomedicine. Searching and extracting knowledge across these domains requires a fast and scalable solution that addresses the requirements of domain experts as well as casual users. We present the EBI Search engine, referred to here as 'EBI Search', an easy-to-use fast text search and indexing system with powerful data navigation and retrieval capabilities. API integration provides access to analytical tools, allowing users to further investigate the results of their search. The interconnectivity that exists between data resources at EMBL-EBI provides easy, quick and precise navigation and a better understanding of the relationship between different data types including sequences, genes, gene products, proteins, protein domains, protein families, enzymes and macromolecular structures, together with relevant life science literature.

摘要

欧洲生物信息学研究所（EMBL-EBI - https://www.ebi.ac.uk）提供对生物学和生物医学所有主要领域数据的免费无限制访问。在这些领域中搜索和提取知识需要一个快速且可扩展的解决方案，以满足领域专家和普通用户的需求。我们展示了EBI搜索引擎，在此称为“EBI搜索”，这是一个易于使用的快速文本搜索和索引系统，具有强大的数据导航和检索功能。API集成提供了对分析工具的访问，允许用户进一步研究其搜索结果。EMBL-EBI数据资源之间存在的互连性提供了便捷、快速且精确的导航，并能更好地理解不同数据类型之间的关系，包括序列、基因、基因产物、蛋白质、蛋白质结构域、蛋白质家族、酶和大分子结构，以及相关的生命科学文献。

相似文献

1
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.
Nucleic Acids Res. 2015 Jul 1;43(W1):W585-8. doi: 10.1093/nar/gkv316. Epub 2015 Apr 8.
2
The EBI search engine: EBI search as a service-making biological data accessible for all.
Nucleic Acids Res. 2017 Jul 3;45(W1):W545-W549. doi: 10.1093/nar/gkx359.
3
The EMBL-EBI bioinformatics web and programmatic tools framework.
Nucleic Acids Res. 2015 Jul 1;43(W1):W580-4. doi: 10.1093/nar/gkv279. Epub 2015 Apr 6.
4
The EMBL-EBI search and sequence analysis tools APIs in 2019.
Nucleic Acids Res. 2019 Jul 2;47(W1):W636-W641. doi: 10.1093/nar/gkz268.
5
Search and sequence analysis tools services from EMBL-EBI in 2022.
Nucleic Acids Res. 2022 Jul 5;50(W1):W276-W279. doi: 10.1093/nar/gkac240.
6
Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.
Curr Protoc. 2024 Jun;4(6):e1065. doi: 10.1002/cpz1.1065.
7
Public web-based services from the European Bioinformatics Institute.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W3-9. doi: 10.1093/nar/gkh405.
8
EMBL Nucleotide Sequence Database in 2006.
Nucleic Acids Res. 2007 Jan;35(Database issue):D16-20. doi: 10.1093/nar/gkl913. Epub 2006 Dec 5.
9
The EMBL Nucleotide Sequence Database.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D29-33. doi: 10.1093/nar/gki098.
10
The EMBL Nucleotide Sequence Database.
Nucleic Acids Res. 2002 Jan 1;30(1):21-6. doi: 10.1093/nar/30.1.21.

引用本文的文献

1
Computational epitope-based vaccine design with bioinformatics approach; a review.
Heliyon. 2025 Jan 4;11(1):e41714. doi: 10.1016/j.heliyon.2025.e41714. eCollection 2025 Jan 15.
2
Stepping towards pollen DNA metabarcoding: A breakthrough in forensic sciences.
Forensic Sci Med Pathol. 2024 Dec;20(4):1464-1474. doi: 10.1007/s12024-023-00770-8. Epub 2023 Dec 26.
3
The Arf-GEF GBF1 undergoes multi-domain structural shifts to activate Arf at the Golgi.
Front Cell Dev Biol. 2023 Sep 7;11:1233272. doi: 10.3389/fcell.2023.1233272. eCollection 2023.
4
High Expression of VAV Gene Family Predicts Poor Prognosis of Acute Myeloid Leukemia.
Technol Cancer Res Treat. 2021 Jan-Dec;20:15330338211065877. doi: 10.1177/15330338211065877.
5
The N-Terminal Region of Yeast Protein Phosphatase Ppz1 Is a Determinant for Its Toxicity.
Int J Mol Sci. 2020 Oct 19;21(20):7733. doi: 10.3390/ijms21207733.
6
Identification the prognostic value of glutathione peroxidases expression levels in acute myeloid leukemia.
Ann Transl Med. 2020 Jun;8(11):678. doi: 10.21037/atm-20-3296.
7
Heat Stress Tolerance in Rice ( L.): Identification of Quantitative Trait Loci and Candidate Genes for Seedling Growth Under Heat Stress.
Front Plant Sci. 2018 Nov 1;9:1578. doi: 10.3389/fpls.2018.01578. eCollection 2018.
8
Combining DNA methylation and RNA sequencing data of cancer for supervised knowledge extraction.
BioData Min. 2018 Oct 25;11:22. doi: 10.1186/s13040-018-0184-6. eCollection 2018.
9
Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge.
Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay017.
10
The ARF guanine nucleotide exchange factor GBF1 is targeted to Golgi membranes through a PIP-binding domain.
J Cell Sci. 2018 Feb 5;131(3):jcs210245. doi: 10.1242/jcs.210245.

本文引用的文献

1
The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Res. 2015 Jan;43(Database issue):D213-21. doi: 10.1093/nar/gku1243. Epub 2014 Nov 26.
2
Content discovery and retrieval services at the European Nucleotide Archive.
Nucleic Acids Res. 2015 Jan;43(Database issue):D23-9. doi: 10.1093/nar/gku1129. Epub 2014 Nov 17.
3
Ensembl 2015.
Nucleic Acids Res. 2015 Jan;43(Database issue):D662-9. doi: 10.1093/nar/gku1010. Epub 2014 Oct 28.
4
RNAcentral: an international database of ncRNA sequences.
Nucleic Acids Res. 2015 Jan;43(Database issue):D123-9. doi: 10.1093/nar/gku991. Epub 2014 Oct 28.
5
Updates in Rhea--a manually curated resource of biochemical reactions.
Nucleic Acids Res. 2015 Jan;43(Database issue):D459-64. doi: 10.1093/nar/gku961. Epub 2014 Oct 20.
6
InterProScan 5: genome-scale protein function classification.
Bioinformatics. 2014 May 1;30(9):1236-40. doi: 10.1093/bioinformatics/btu031. Epub 2014 Jan 21.
7
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
Nucleic Acids Res. 2014 Jan;42(Database issue):D926-32. doi: 10.1093/nar/gkt1270. Epub 2013 Dec 4.
8
PDBe: Protein Data Bank in Europe.
Nucleic Acids Res. 2014 Jan;42(Database issue):D285-91. doi: 10.1093/nar/gkt1180. Epub 2013 Nov 27.
9
Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence variants.
Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8. doi: 10.1093/nar/gkt1198. Epub 2013 Nov 26.
10
The European Bioinformatics Institute's data resources 2014.
Nucleic Acids Res. 2014 Jan;42(Database issue):D18-25. doi: 10.1093/nar/gkt1206. Epub 2013 Nov 23.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型，支持多种主流文档格式。

立即体验