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作为对环境变化的响应,性状进化与停滞的简单模型与复杂模型

Simple versus complex models of trait evolution and stasis as a response to environmental change.

作者信息

Hunt Gene, Hopkins Melanie J, Lidgard Scott

机构信息

Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington DC 20013-7012;

Division of Paleontology, American Museum of Natural History, New York, NY 10024; and.

出版信息

Proc Natl Acad Sci U S A. 2015 Apr 21;112(16):4885-90. doi: 10.1073/pnas.1403662111.

Abstract

Previous analyses of evolutionary patterns, or modes, in fossil lineages have focused overwhelmingly on three simple models: stasis, random walks, and directional evolution. Here we use likelihood methods to fit an expanded set of evolutionary models to a large compilation of ancestor-descendant series of populations from the fossil record. In addition to the standard three models, we assess more complex models with punctuations and shifts from one evolutionary mode to another. As in previous studies, we find that stasis is common in the fossil record, as is a strict version of stasis that entails no real evolutionary changes. Incidence of directional evolution is relatively low (13%), but higher than in previous studies because our analytical approach can more sensitively detect noisy trends. Complex evolutionary models are often favored, overwhelmingly so for sequences comprising many samples. This finding is consistent with evolutionary dynamics that are, in reality, more complex than any of the models we consider. Furthermore, the timing of shifts in evolutionary dynamics varies among traits measured from the same series. Finally, we use our empirical collection of evolutionary sequences and a long and highly resolved proxy for global climate to inform simulations in which traits adaptively track temperature changes over time. When realistically calibrated, we find that this simple model can reproduce important aspects of our paleontological results. We conclude that observed paleontological patterns, including the prevalence of stasis, need not be inconsistent with adaptive evolution, even in the face of unstable physical environments.

摘要

以往对化石谱系进化模式或方式的分析,绝大多数都集中在三种简单模型上:静态、随机游走和定向进化。在此,我们使用似然方法,将一组扩展的进化模型应用于从化石记录中大量收集的祖先 - 后代种群系列。除了标准的三种模型外,我们还评估了带有间断以及从一种进化模式转变为另一种进化模式的更复杂模型。与以往研究一样,我们发现静态在化石记录中很常见,一种严格意义上不涉及真正进化变化的静态也是如此。定向进化的发生率相对较低(13%),但高于以往研究,因为我们的分析方法能够更灵敏地检测到有噪声的趋势。复杂的进化模型往往更受青睐,对于包含许多样本的序列更是如此。这一发现与实际的进化动态一致,实际上进化动态比我们所考虑的任何模型都更复杂。此外,进化动态转变的时间在从同一序列测量的不同性状之间有所不同。最后,我们利用我们对进化序列的实证收集以及一个长期且分辨率高的全球气候代理数据来为模拟提供信息,在这些模拟中,性状随时间自适应地追踪温度变化。当进行实际校准时,我们发现这个简单模型能够重现我们古生物学结果的重要方面。我们得出结论,即使面对不稳定的物理环境,观察到的古生物学模式,包括静态的普遍存在,不一定与适应性进化不一致。

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