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预测药物代谢:实验和/或计算?

Predicting drug metabolism: experiment and/or computation?

机构信息

Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zürich, 8093 Zürich, Switzerland; and the Center for Bioinformatics, University of Hamburg, 20146 Hamburg, Germany.

Global Drug Discovery, Bayer Pharma AG, 42096 Wuppertal, Germany.

出版信息

Nat Rev Drug Discov. 2015 Jun;14(6):387-404. doi: 10.1038/nrd4581. Epub 2015 Apr 24.

DOI:10.1038/nrd4581
PMID:25907346
Abstract

Drug metabolism can produce metabolites with physicochemical and pharmacological properties that differ substantially from those of the parent drug, and consequently has important implications for both drug safety and efficacy. To reduce the risk of costly clinical-stage attrition due to the metabolic characteristics of drug candidates, there is a need for efficient and reliable ways to predict drug metabolism in vitro, in silico and in vivo. In this Perspective, we provide an overview of the state of the art of experimental and computational approaches for investigating drug metabolism. We highlight the scope and limitations of these methods, and indicate strategies to harvest the synergies that result from combining measurement and prediction of drug metabolism.

摘要

药物代谢可以产生具有显著不同于母体药物的理化性质和药理学性质的代谢物,因此对药物的安全性和疗效都有重要影响。为了降低由于候选药物的代谢特征而导致在临床阶段淘汰的风险,需要有效的、可靠的方法来预测体外、体内和体内的药物代谢。在本观点中,我们提供了一种用于研究药物代谢的实验和计算方法的最新概述。我们强调了这些方法的范围和局限性,并指出了从药物代谢的测量和预测相结合中获取协同作用的策略。

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SMARTCyp: A 2D Method for Prediction of Cytochrome P450-Mediated Drug Metabolism.SMARTCyp:一种预测细胞色素P450介导的药物代谢的二维方法。
ACS Med Chem Lett. 2010 Mar 15;1(3):96-100. doi: 10.1021/ml100016x. eCollection 2010 Jun 10.
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Ligand-Based Site of Metabolism Prediction for Cytochrome P450 2D6.基于配体的细胞色素P450 2D6代谢位点预测
ACS Med Chem Lett. 2011 Nov 7;3(1):69-73. doi: 10.1021/ml200246f. eCollection 2012 Jan 12.
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Identifying the macromolecular targets of de novo-designed chemical entities through self-organizing map consensus.
新型2-巯基咪唑啉酮作为具有潜在多靶点激酶抑制活性的双重抗菌和抗增殖剂的合成与计算研究
Sci Rep. 2025 Aug 27;15(1):31527. doi: 10.1038/s41598-025-17260-2.
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Site-of-Metabolism Prediction with Aleatoric and Epistemic Uncertainty Quantification.具有偶然不确定性和认知不确定性量化的代谢位点预测
J Chem Inf Model. 2025 Aug 25;65(16):8462-8474. doi: 10.1021/acs.jcim.5c00762. Epub 2025 Aug 6.
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Advancing ADMET prediction for major CYP450 isoforms: graph-based models, limitations, and future directions.推进主要细胞色素P450同工酶的ADMET预测:基于图的模型、局限性及未来方向。
Biomed Eng Online. 2025 Jul 23;24(1):93. doi: 10.1186/s12938-025-01412-6.
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