Salman Verena, Yang Tingting, Berben Tom, Klein Frieder, Angert Esther, Teske Andreas
Department of Microbiology, Cornell University, Ithaca, NY, USA.
Department of Marine Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
ISME J. 2015 Nov;9(11):2503-14. doi: 10.1038/ismej.2015.62. Epub 2015 Apr 24.
Large sulfur bacteria of the genus Achromatium are exceptional among Bacteria and Archaea as they can accumulate high amounts of internal calcite. Although known for more than 100 years, they remain uncultured, and only freshwater populations have been studied so far. Here we investigate a marine population of calcite-accumulating bacteria that is primarily found at the sediment surface of tide pools in a salt marsh, where high sulfide concentrations meet oversaturated oxygen concentrations during the day. Dynamic sulfur cycling by phototrophic sulfide-oxidizing and heterotrophic sulfate-reducing bacteria co-occurring in these sediments creates a highly sulfidic environment that we propose induces behavioral differences in the Achromatium population compared with reported migration patterns in a low-sulfide environment. Fluctuating intracellular calcium/sulfur ratios at different depths and times of day indicate a biochemical reaction of the salt marsh Achromatium to diurnal changes in sedimentary redox conditions. We correlate this calcite dynamic with new evidence regarding its formation/mobilization and suggest general implications as well as a possible biological function of calcite accumulation in large bacteria in the sediment environment that is governed by gradients. Finally, we propose a new taxonomic classification of the salt marsh Achromatium based on their adaptation to a significantly different habitat than their freshwater relatives, as indicated by their differential behavior as well as phylogenetic distance on 16S ribosomal RNA gene level. In future studies, whole-genome characterization and additional ecophysiological factors could further support the distinctive position of salt marsh Achromatium.
无色硫细菌属的大型硫细菌在细菌和古细菌中很特殊,因为它们能积累大量的内部方解石。尽管已被发现100多年,但它们仍未被培养,迄今为止仅对淡水种群进行过研究。在此,我们研究了一个积累方解石的海洋细菌种群,该种群主要存在于盐沼潮池的沉积物表面,白天这里高硫化物浓度与过饱和氧浓度相遇。这些沉积物中同时存在的光合硫化物氧化细菌和异养硫酸盐还原细菌进行的动态硫循环创造了一个高度硫化的环境,我们认为这会导致无色硫细菌种群的行为与在低硫化物环境中报道的迁移模式有所不同。不同深度和一天中不同时间细胞内钙/硫比率的波动表明,盐沼无色硫细菌对沉积物氧化还原条件的昼夜变化有生化反应。我们将这种方解石动态与关于其形成/迁移的新证据联系起来,并提出了一般意义以及方解石在受梯度控制的沉积物环境中的大型细菌中积累的可能生物学功能。最后,我们基于盐沼无色硫细菌与其淡水亲缘种相比对显著不同栖息地的适应情况,提出了一种新的分类,这体现在它们的不同行为以及16S核糖体RNA基因水平上的系统发育距离。在未来的研究中,全基因组特征分析和其他生态生理因素可能会进一步支持盐沼无色硫细菌的独特地位。