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MyPro:用于原核生物基因组自动组装和注释的无缝流程。

MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation.

作者信息

Liao Yu-Chieh, Lin Hsin-Hung, Sabharwal Amarpreet, Haase Elaine M, Scannapieco Frank A

机构信息

Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Miaoli County, Taiwan.

Department of Oral Biology, University at Buffalo, State University of New York, Buffalo, NY, USA.

出版信息

J Microbiol Methods. 2015 Jun;113:72-4. doi: 10.1016/j.mimet.2015.04.006. Epub 2015 Apr 21.

Abstract

MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease.

摘要

MyPro是一个用于高质量原核生物基因组组装和注释的软件流程。它在18株口腔链球菌菌株上进行了验证,以生成可提交的注释草稿基因组。作为虚拟机安装并由更新数据库支持的MyPro将使生物学家能够轻松地进行高质量的原核生物基因组组装和注释。

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