• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

沉降速度分析中拟合质量的直方图方法。

A histogram approach to the quality of fit in sedimentation velocity analyses.

作者信息

Ma Jia, Zhao Huaying, Schuck Peter

机构信息

Dynamics of Macromolecular Assembly Section, Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, Bethesda, MD 20892, USA.

Dynamics of Macromolecular Assembly Section, Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, Bethesda, MD 20892, USA.

出版信息

Anal Biochem. 2015 Aug 15;483:1-3. doi: 10.1016/j.ab.2015.04.029. Epub 2015 May 7.

DOI:10.1016/j.ab.2015.04.029
PMID:25959995
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4461538/
Abstract

The quality of fit of sedimentation velocity data is critical to judge the veracity of the sedimentation model and accuracy of the derived macromolecular parameters. Absolute statistical measures are usually complicated by the presence of characteristic systematic errors and run-to-run variation in the stochastic noise of data acquisition. We present a new graphical approach to visualize systematic deviations between data and model in the form of a histogram of residuals. In comparison with the ideally expected Gaussian distribution, it can provide a robust measure of fit quality and be used to flag poor models.

摘要

沉降速度数据的拟合质量对于判断沉降模型的准确性以及所推导的大分子参数的精度至关重要。由于存在特征性系统误差以及数据采集随机噪声中的逐次变化,绝对统计量通常会变得复杂。我们提出一种新的图形方法,以残差直方图的形式直观呈现数据与模型之间的系统偏差。与理想的高斯分布相比,它能够提供一种稳健的拟合质量度量,并用于标记不佳的模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7d1/4461538/ff3770f09fac/nihms689045f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7d1/4461538/ff3770f09fac/nihms689045f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7d1/4461538/ff3770f09fac/nihms689045f1.jpg

相似文献

1
A histogram approach to the quality of fit in sedimentation velocity analyses.沉降速度分析中拟合质量的直方图方法。
Anal Biochem. 2015 Aug 15;483:1-3. doi: 10.1016/j.ab.2015.04.029. Epub 2015 May 7.
2
Improving the thermal, radial, and temporal accuracy of the analytical ultracentrifuge through external references.通过外部参照来提高分析超速离心机的热学、径向和时间精度。
Anal Biochem. 2013 Sep 1;440(1):81-95. doi: 10.1016/j.ab.2013.05.011. Epub 2013 May 24.
3
Sedimentation equilibrium analysis of interference optical data by systematic noise decomposition.通过系统噪声分解对干涉光学数据进行沉降平衡分析。
Anal Biochem. 1999 Aug 1;272(2):199-208. doi: 10.1006/abio.1999.4172.
4
Variable Field Analytical Ultracentrifugation: II. Gravitational Sweep Sedimentation Velocity.可变场分析超速离心法:II. 重力扫描沉降速度
Biophys J. 2016 Jan 5;110(1):103-12. doi: 10.1016/j.bpj.2015.11.027.
5
Systematic noise removal from analytical ultracentrifugation data with UltraScan.用 UltraScan 从分析超速离心数据中去除系统噪声。
Eur Biophys J. 2023 Jul;52(4-5):203-213. doi: 10.1007/s00249-023-01631-6. Epub 2023 Feb 14.
6
Analysis of weight average sedimentation velocity data.重均沉降速度数据的分析
Methods Enzymol. 2000;321:81-100. doi: 10.1016/s0076-6879(00)21188-9.
7
Using prior knowledge in the determination of macromolecular size-distributions by analytical ultracentrifugation.在通过分析超速离心法测定大分子尺寸分布时运用先验知识。
Biomacromolecules. 2007 Jun;8(6):2011-24. doi: 10.1021/bm070193j. Epub 2007 May 24.
8
Quantitative Analysis of Protein Self-Association by Sedimentation Velocity.通过沉降速度对蛋白质自缔合进行定量分析。
Curr Protoc Protein Sci. 2020 Sep;101(1):e109. doi: 10.1002/cpps.109.
9
Sedimentation Velocity Methods for the Characterization of Protein Heterogeneity and Protein Affinity Interactions.沉降速度法用于蛋白质异质性和蛋白质亲和相互作用的表征。
Methods Mol Biol. 2021;2247:155-171. doi: 10.1007/978-1-0716-1126-5_9.
10
Sedimentation velocity, multi-speed method for analyzing polydisperse solutions.沉降速度,用于分析多分散溶液的多速方法。
Biophys Chem. 2004 Mar 1;108(1-3):273-9. doi: 10.1016/j.bpc.2003.10.027.

引用本文的文献

1
An automated interface for sedimentation velocity analysis in SEDFIT.SEDFIT 中沉降速度分析的自动化接口。
PLoS Comput Biol. 2023 Sep 5;19(9):e1011454. doi: 10.1371/journal.pcbi.1011454. eCollection 2023 Sep.
2
An automated interface for sedimentation velocity analysis in SEDFIT.SEDFIT中沉降速度分析的自动化界面。
bioRxiv. 2023 May 14:2023.05.14.540690. doi: 10.1101/2023.05.14.540690.
3
SViMULATE: a computer program facilitating interactive, multi-mode simulation of analytical ultracentrifugation data.SViMULATE:一个计算机程序,用于方便地对分析超速离心数据进行交互式、多模式模拟。

本文引用的文献

1
Multidimensional analysis of nanoparticles with highly disperse properties using multiwavelength analytical ultracentrifugation.使用多波长分析超速离心法对具有高分散特性的纳米粒子进行多维分析。
ACS Nano. 2014 Sep 23;8(9):8871-86. doi: 10.1021/nn503205k. Epub 2014 Aug 20.
2
Analysis of protein interactions with picomolar binding affinity by fluorescence-detected sedimentation velocity.通过荧光检测沉降速度分析具有皮摩尔结合亲和力的蛋白质相互作用。
Anal Chem. 2014 Mar 18;86(6):3181-7. doi: 10.1021/ac500093m. Epub 2014 Mar 5.
3
Analytical Ultracentrifugation as a Tool for Studying Protein Interactions.
Eur Biophys J. 2023 Jul;52(4-5):293-302. doi: 10.1007/s00249-023-01637-0. Epub 2023 Mar 9.
4
Enhanced Sample Handling for Analytical Ultracentrifugation with 3D-Printed Centerpieces.利用 3D 打印的中心部件增强分析超速离心的样品处理。
Anal Chem. 2019 May 7;91(9):5866-5873. doi: 10.1021/acs.analchem.9b00202. Epub 2019 Apr 15.
5
Returning Results: Let's Be Honest!返回结果:让我们坦诚相待!
Genet Test Mol Biomarkers. 2017 Mar;21(3):134-139. doi: 10.1089/gtmb.2016.0395. Epub 2017 Feb 24.
6
Sedimentation coefficient distributions of large particles.大颗粒的沉降系数分布。
Analyst. 2016 Jul 21;141(14):4400-9. doi: 10.1039/c6an00534a. Epub 2016 May 19.
7
Variable Field Analytical Ultracentrifugation: II. Gravitational Sweep Sedimentation Velocity.可变场分析超速离心法:II. 重力扫描沉降速度
Biophys J. 2016 Jan 5;110(1):103-12. doi: 10.1016/j.bpj.2015.11.027.
分析超速离心法作为研究蛋白质相互作用的工具
Biophys Rev. 2013 Jun 1;5(2):159-171. doi: 10.1007/s12551-013-0106-2.
4
Overview of current methods in sedimentation velocity and sedimentation equilibrium analytical ultracentrifugation.沉降速度法和沉降平衡分析超离心法的当前方法概述
Curr Protoc Protein Sci. 2013 Feb;Chapter 20:Unit20.12. doi: 10.1002/0471140864.ps2012s71.
5
Global multi-method analysis of affinities and cooperativity in complex systems of macromolecular interactions.全球多方法分析大分子相互作用复杂体系中的亲和力和协同性。
Anal Chem. 2012 Nov 6;84(21):9513-9. doi: 10.1021/ac302357w. Epub 2012 Oct 16.
6
Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models.从原子和残基水平模型预测刚性蛋白质的流体力学和其他溶液性质。
Biophys J. 2011 Aug 17;101(4):892-8. doi: 10.1016/j.bpj.2011.06.046.
7
The boundary structure in the analysis of reversibly interacting systems by sedimentation velocity.沉降速度分析中可相互作用体系的边界结构。
Methods. 2011 May;54(1):16-30. doi: 10.1016/j.ymeth.2011.01.010. Epub 2011 Feb 16.
8
Analytical ultracentrifugation combined with X-ray and neutron scattering: Experiment and modelling.分析超速离心结合 X 射线和中子散射:实验和建模。
Methods. 2011 May;54(1):181-99. doi: 10.1016/j.ymeth.2011.01.004. Epub 2011 Jan 20.
9
Global fit and structure optimization of flexible and rigid macromolecules and nanoparticles from analytical ultracentrifugation and other dilute solution properties.从分析超速离心和其他稀溶液性质出发,对柔性和刚性大分子及纳米颗粒进行全局拟合和结构优化。
Methods. 2011 May;54(1):115-23. doi: 10.1016/j.ymeth.2010.12.004. Epub 2010 Dec 14.
10
Recent advances in macromolecular hydrodynamic modeling.大分子流体力学建模的最新进展。
Methods. 2011 May;54(1):101-14. doi: 10.1016/j.ymeth.2010.10.005. Epub 2010 Nov 10.