Akula Nirmala, Wendland Jens R, Choi Kwang H, McMahon Francis J
Human Genetics Branch, National Institute of Mental Health Intramural Research Program (NIMH-IRP), National Institutes of Health, US Department of Health and Human Services, Bethesda, MD, USA.
Department of Psychiatry, Uniformed Services University of the Health Sciences, Bethesda, MD, USA.
Neuropsychopharmacology. 2016 Feb;41(3):886-95. doi: 10.1038/npp.2015.218. Epub 2015 Jul 27.
Genome-wide association studies (GWAS) have identified several common variants associated with bipolar disorder (BD), but the biological meaning of these findings remains unclear. Integrative genomics-the integration of GWAS signals with gene expression data-may illuminate genes and gene networks that have key roles in the pathogenesis of BD. We applied weighted gene co-expression network analysis (WGCNA), which exploits patterns of co-expression among genes, to brain transcriptome data obtained by sequencing of poly-A RNA derived from postmortem dorsolateral prefrontal cortex from people with BD, along with age- and sex-matched controls. WGCNA identified 33 gene modules. Many of the modules corresponded closely to those previously reported in human cortex. Three modules were associated with BD, enriched for genes differentially expressed in BD, and also enriched for signals in prior GWAS of BD. Functional analysis of genes within these modules revealed significant enrichment of several functionally related sets of genes, especially those involved in the postsynaptic density (PSD). These results provide convergent support for the hypothesis that dysregulation of genes involved in the PSD is a key factor in the pathogenesis of BD. If replicated in larger samples, these findings could point toward new therapeutic targets for BD.
全基因组关联研究(GWAS)已经确定了几个与双相情感障碍(BD)相关的常见变异,但这些发现的生物学意义仍不清楚。整合基因组学——将GWAS信号与基因表达数据整合——可能会揭示在BD发病机制中起关键作用的基因和基因网络。我们应用加权基因共表达网络分析(WGCNA),该方法利用基因间的共表达模式,对来自BD患者以及年龄和性别匹配的对照者的死后背外侧前额叶皮质的多聚腺苷酸RNA测序获得的脑转录组数据进行分析。WGCNA识别出33个基因模块。其中许多模块与先前在人类皮质中报道的模块密切对应。三个模块与BD相关,富含在BD中差异表达的基因,并且在先前的BD全基因组关联研究中也富含信号。对这些模块内基因的功能分析揭示了几组功能相关基因的显著富集,特别是那些参与突触后致密物(PSD)的基因。这些结果为PSD相关基因失调是BD发病机制中的关键因素这一假说提供了一致的支持。如果在更大的样本中得到验证,这些发现可能指向BD的新治疗靶点。