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通过OMERO发布和共享多维图像数据。

Publishing and sharing multi-dimensional image data with OMERO.

作者信息

Burel Jean-Marie, Besson Sébastien, Blackburn Colin, Carroll Mark, Ferguson Richard K, Flynn Helen, Gillen Kenneth, Leigh Roger, Li Simon, Lindner Dominik, Linkert Melissa, Moore William J, Ramalingam Balaji, Rozbicki Emil, Tarkowska Aleksandra, Walczysko Petr, Allan Chris, Moore Josh, Swedlow Jason R

机构信息

Centre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.

Glencoe Software, Inc., Seattle, WA, USA.

出版信息

Mamm Genome. 2015 Oct;26(9-10):441-7. doi: 10.1007/s00335-015-9587-6. Epub 2015 Jul 30.

Abstract

Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMERO's Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME Consortium at www.openmicroscopy.org.

摘要

成像数据在生命科学和生物医学领域中用于测量细胞、组织和生物体的分子与结构组成及动态变化。数据集大小从兆字节到太字节不等,通常包含二进制像素数据和描述采集过程及任何衍生结果的元数据。OMERO图像数据管理平台允许用户根据特定权限级别安全地共享图像数据集:数据可以私有保存、与一组同事共享,或通过公共URL提供。用户通过将数据分配给具有定义成员资格和访问权限的特定组来控制访问。OMERO的权限系统支持实验室中的简单数据共享、协作数据分析,甚至教学环境。OMERO软件是开源的,由开放显微镜组织联盟(OME Consortium)在www.openmicroscopy.org上发布。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87e5/4602067/328521296edd/335_2015_9587_Fig1_HTML.jpg

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