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木质素过氧化物酶直接电子转移的证明:瞬态动力学、定向诱变、电子顺磁共振和核磁共振研究

Demonstration of Lignin-to-Peroxidase Direct Electron Transfer: A TRANSIENT-STATE KINETICS, DIRECTED MUTAGENESIS, EPR, AND NMR STUDY.

作者信息

Sáez-Jiménez Verónica, Baratto Maria Camilla, Pogni Rebecca, Rencoret Jorge, Gutiérrez Ana, Santos José Ignacio, Martínez Angel T, Ruiz-Dueñas Francisco Javier

机构信息

From the Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain.

the Department of Biotechnology, Chemistry and Pharmacy, University of Siena, Via Aldo Moro, I-53100 Siena, Italy.

出版信息

J Biol Chem. 2015 Sep 18;290(38):23201-13. doi: 10.1074/jbc.M115.665919. Epub 2015 Aug 3.

Abstract

Versatile peroxidase (VP) is a high redox-potential peroxidase of biotechnological interest that is able to oxidize phenolic and non-phenolic aromatics, Mn(2+), and different dyes. The ability of VP from Pleurotus eryngii to oxidize water-soluble lignins (softwood and hardwood lignosulfonates) is demonstrated here by a combination of directed mutagenesis and spectroscopic techniques, among others. In addition, direct electron transfer between the peroxidase and the lignin macromolecule was kinetically characterized using stopped-flow spectrophotometry. VP variants were used to show that this reaction strongly depends on the presence of a solvent-exposed tryptophan residue (Trp-164). Moreover, the tryptophanyl radical detected by EPR spectroscopy of H2O2-activated VP (being absent from the W164S variant) was identified as catalytically active because it was reduced during lignosulfonate oxidation, resulting in the appearance of a lignin radical. The decrease of lignin fluorescence (excitation at 355 nm/emission at 400 nm) during VP treatment under steady-state conditions was accompanied by a decrease of the lignin (aromatic nuclei and side chains) signals in one-dimensional and two-dimensional NMR spectra, confirming the ligninolytic capabilities of the enzyme. Simultaneously, size-exclusion chromatography showed an increase of the molecular mass of the modified residual lignin, especially for the (low molecular mass) hardwood lignosulfonate, revealing that the oxidation products tend to recondense during the VP treatment. Finally, mutagenesis of selected residues neighboring Trp-164 resulted in improved apparent second-order rate constants for lignosulfonate reactions, revealing that changes in its protein environment (modifying the net negative charge and/or substrate accessibility/binding) can modulate the reactivity of the catalytic tryptophan.

摘要

多功能过氧化物酶(VP)是一种具有生物技术应用价值的高氧化还原电位过氧化物酶,能够氧化酚类和非酚类芳烃、Mn(2+)以及不同的染料。本文通过定向诱变和光谱技术等多种方法,证明了刺芹侧耳来源的VP氧化水溶性木质素(软木和硬木木质素磺酸盐)的能力。此外,使用停流分光光度法对过氧化物酶与木质素大分子之间的直接电子转移进行了动力学表征。VP变体被用于表明该反应强烈依赖于溶剂暴露的色氨酸残基(Trp-164)的存在。此外,通过H2O2激活的VP的电子顺磁共振光谱检测到的色氨酸自由基(W164S变体中不存在)被确定为具有催化活性,因为它在木质素磺酸盐氧化过程中被还原,导致出现木质素自由基。在稳态条件下VP处理过程中木质素荧光(激发波长355nm/发射波长400nm)的降低伴随着一维和二维核磁共振光谱中木质素(芳环核和侧链)信号的降低,证实了该酶的木质素分解能力。同时,尺寸排阻色谱显示修饰后的残留木质素分子量增加,特别是对于(低分子量)硬木木质素磺酸盐,表明氧化产物在VP处理过程中倾向于再缩合。最后,对Trp-164附近选定残基的诱变导致木质素磺酸盐反应的表观二级速率常数提高,表明其蛋白质环境的变化(改变净负电荷和/或底物可及性/结合)可以调节催化色氨酸的反应性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53c9/4645588/33685c6cb036/zbc0421526550001.jpg

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