大麻叶假靛非典型、非感染性、无效分离株Frankia sp. 菌株DC12的基因组序列草图
Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina.
作者信息
Tisa Louis S, Beauchemin Nicholas, Cantor Michael N, Furnholm Teal, Ghodhbane-Gtari Faten, Goodwin Lynne, Copeland Alex, Gtari Maher, Huntemann Marcel, Ivanova Natalia, Kyrpides Nikos, Markowitz Victor, Mavrommatis Kostas, Mikhailova Natalia, Nouioui Imen, Oshone Rediet, Ovchinnikova Galina, Pagani Ioanna, Palaniappan Krishnaveni, Pati Amrita, Sen Arnab, Shapiro Nicole, Szeto Ernest, Wall Luis, Wishart Jessie, Woyke Tanja
机构信息
University of New Hampshire, Durham, New Hampshire, USA
University of New Hampshire, Durham, New Hampshire, USA.
出版信息
Genome Announc. 2015 Aug 6;3(4):e00889-15. doi: 10.1128/genomeA.00889-15.
Abstract
Frankia sp. strain DC12, isolated from root nodules of Datisca cannabina, is a member of the fourth lineage of Frankia, which is unable to reinfect actinorhizal plants. Here, we report its 6.88-Mbp high-quality draft genome sequence, with a G+C content of 71.92% and 5,858 candidate protein-coding genes.
摘要
从大麻叶泽芹根瘤中分离出的弗兰克氏菌属菌株DC12，是弗兰克氏菌第四谱系的成员，无法再次感染放线菌根植物。在此，我们报告其688万碱基对的高质量草图基因组序列，G+C含量为71.92%，有5858个候选蛋白质编码基因。
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本文引用的文献
1
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.
Nucleic Acids Res. 2015 Jan;43(Database issue):D1099-106. doi: 10.1093/nar/gku950. Epub 2014 Oct 27.
2
Draft Genome Sequence of Frankia sp. Strain BMG5.23, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina glauca Grown in Tunisia.
Genome Announc. 2014 May 29;2(3):e00520-14. doi: 10.1128/genomeA.00520-14.
3
Draft Genome Sequence of Frankia sp. Strain Thr, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina cunninghamiana Grown in Egypt.
Genome Announc. 2014 May 22;2(3):e00493-14. doi: 10.1128/genomeA.00493-14.
4
Draft Genome Sequence of Frankia sp. Strain CcI6, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Casuarina cunninghamiana.
Genome Announc. 2014 Jan 16;2(1):e01205-13. doi: 10.1128/genomeA.01205-13.
5
What stories can the Frankia genomes start to tell us?
J Biosci. 2013 Nov;38(4):719-26. doi: 10.1007/s12038-013-9364-1.
6
Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis.
Genome Announc. 2013 Jul 11;1(4):e00503-13. doi: 10.1128/genomeA.00503-13.
7
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8
Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida.
Genome Announc. 2013 Mar 21;1(2):e0010313. doi: 10.1128/genomeA.00103-13.
9
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10
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J Bacteriol. 2011 Dec;193(24):7017-8. doi: 10.1128/JB.06208-11.
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