• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用合成生物学重振天然产物组合生物合成。

Reinvigorating natural product combinatorial biosynthesis with synthetic biology.

作者信息

Kim Eunji, Moore Bradley S, Yoon Yeo Joon

机构信息

Department of Chemistry and Nano Science, Ewha Womans University, Seoul, Republic of Korea.

1] Scripps Institution of Oceanography, University of California at San Diego, La Jolla, California, USA. [2] Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, La Jolla, California, USA.

出版信息

Nat Chem Biol. 2015 Sep;11(9):649-59. doi: 10.1038/nchembio.1893.

DOI:10.1038/nchembio.1893
PMID:26284672
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4757526/
Abstract

Natural products continue to play a pivotal role in drug-discovery efforts and in the understanding if human health. The ability to extend nature's chemistry through combinatorial biosynthesis--altering functional groups, regiochemistry and scaffold backbones through the manipulation of biosynthetic enzymes--offers unique opportunities to create natural product analogs. Incorporating emerging synthetic biology techniques has the potential to further accelerate the refinement of combinatorial biosynthesis as a robust platform for the diversification of natural chemical drug leads. Two decades after the field originated, we discuss the current limitations, the realities and the state of the art of combinatorial biosynthesis, including the engineering of substrate specificity of biosynthetic enzymes and the development of heterologous expression systems for biosynthetic pathways. We also propose a new perspective for the combinatorial biosynthesis of natural products that could reinvigorate drug discovery by using synthetic biology in combination with synthetic chemistry.

摘要

天然产物在药物研发以及对人类健康的认知方面持续发挥着关键作用。通过组合生物合成扩展自然化学的能力——通过操纵生物合成酶来改变官能团、区域化学和骨架结构——为创造天然产物类似物提供了独特的机会。纳入新兴的合成生物学技术有可能进一步加速组合生物合成的优化,使其成为天然化学药物先导物多样化的强大平台。在该领域诞生二十年后,我们讨论了组合生物合成当前的局限性、现状和技术水平,包括生物合成酶底物特异性的工程改造以及生物合成途径异源表达系统的开发。我们还提出了一种天然产物组合生物合成的新视角,即通过将合成生物学与合成化学相结合来重振药物研发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/28dd3507c014/nihms758621f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/7ff0d7fd92f9/nihms758621f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/39abedc929c0/nihms758621f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/7bfa7b4c2b05/nihms758621f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/7711457d4a38/nihms758621f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/d4891e6c6f20/nihms758621f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/28dd3507c014/nihms758621f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/7ff0d7fd92f9/nihms758621f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/39abedc929c0/nihms758621f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/7bfa7b4c2b05/nihms758621f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/7711457d4a38/nihms758621f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/d4891e6c6f20/nihms758621f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f176/4757526/28dd3507c014/nihms758621f6.jpg

相似文献

1
Reinvigorating natural product combinatorial biosynthesis with synthetic biology.用合成生物学重振天然产物组合生物合成。
Nat Chem Biol. 2015 Sep;11(9):649-59. doi: 10.1038/nchembio.1893.
2
Combinatorial biosynthesis of cyclic lipopeptide antibiotics: a model for synthetic biology to accelerate the evolution of secondary metabolite biosynthetic pathways.环脂肽抗生素的组合生物合成:合成生物学加速次级代谢物生物合成途径进化的模型
ACS Synth Biol. 2014 Oct 17;3(10):748-58. doi: 10.1021/sb3000673. Epub 2012 Aug 23.
3
Synthetic biological approaches to natural product biosynthesis.合成生物学方法在天然产物生物合成中的应用。
Curr Opin Biotechnol. 2012 Oct;23(5):736-43. doi: 10.1016/j.copbio.2011.12.016. Epub 2012 Jan 3.
4
Recent advances in combinatorial biosynthesis for drug discovery.药物发现中组合生物合成的最新进展。
Drug Des Devel Ther. 2015 Feb 12;9:823-33. doi: 10.2147/DDDT.S63023. eCollection 2015.
5
DNA assembly techniques for next-generation combinatorial biosynthesis of natural products.用于下一代组合生物合成天然产物的 DNA 组装技术。
J Ind Microbiol Biotechnol. 2014 Feb;41(2):469-77. doi: 10.1007/s10295-013-1358-3. Epub 2013 Oct 15.
6
Synthetic biology triggers new era of antibiotics development.合成生物学引发了抗生素开发的新时代。
Subcell Biochem. 2012;64:95-114. doi: 10.1007/978-94-007-5055-5_5.
7
Combinatorial biosynthesis in plants: a (p)review on its potential and future exploitation.植物中的组合生物合成:潜力及其未来开发的综述。
Nat Prod Rep. 2011 Nov;28(12):1897-916. doi: 10.1039/c1np00049g. Epub 2011 Sep 28.
8
A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae.一种用于大肠杆菌和酿酒酵母天然产物研究的即插即用途径重构工作流程。
Biotechnol Bioeng. 2017 Aug;114(8):1847-1854. doi: 10.1002/bit.26309. Epub 2017 Jun 5.
9
Synthetic biology for natural product drug production and engineering.合成生物学在天然产物药物生产和工程中的应用。
Curr Opin Chem Biol. 2020 Oct;58:137-145. doi: 10.1016/j.cbpa.2020.09.006. Epub 2020 Oct 29.
10
Combinatorial biosynthesis of antimicrobials and other natural products.抗菌剂及其他天然产物的组合生物合成
Curr Opin Microbiol. 2001 Oct;4(5):526-34. doi: 10.1016/s1369-5274(00)00246-0.

引用本文的文献

1
Engineering a Biosynthetic Pathway to Produce (+)-Brevianamides A and B.构建生物合成途径以生产(+)-短杆菌酰胺A和B。
ACS Catal. 2025 May 2;15(9):6711-6720. doi: 10.1021/acscatal.5c00753. Epub 2025 Apr 10.
2
Biosynthesis of antibiotics with sulfonamide and azaindane moieties.含磺胺和氮杂茚部分的抗生素的生物合成。
J Antibiot (Tokyo). 2025 Apr 7. doi: 10.1038/s41429-025-00819-6.
3
Exploiting phenotypic heterogeneity to improve production of glutathione by yeast.利用表型异质性提高酵母谷胱甘肽的产量。

本文引用的文献

1
De novo production of the plant-derived alkaloid strictosidine in yeast.酵母中植物源生物碱士的宁苷的从头合成。
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3205-10. doi: 10.1073/pnas.1423555112. Epub 2015 Feb 9.
2
De novo biosynthesis of terminal alkyne-labeled natural products.从头生物合成末端炔基标记的天然产物。
Nat Chem Biol. 2015 Feb;11(2):115-20. doi: 10.1038/nchembio.1718. Epub 2014 Dec 22.
3
High-efficiency multiplex genome editing of Streptomyces species using an engineered CRISPR/Cas system.利用工程化CRISPR/Cas系统对链霉菌进行高效多重基因组编辑。
Microb Cell Fact. 2024 Oct 7;23(1):267. doi: 10.1186/s12934-024-02536-5.
4
Integrating bacterial molecular genetics with chemical biology for renewed antibacterial drug discovery.将细菌分子遗传学与化学生物学相结合,重新发现抗菌药物。
Biochem J. 2024 Jul 3;481(13):839-864. doi: 10.1042/BCJ20220062.
5
High-throughput reprogramming of an NRPS condensation domain.高通量重编程 NRPS 缩合结构域。
Nat Chem Biol. 2024 Jun;20(6):761-769. doi: 10.1038/s41589-023-01532-x. Epub 2024 Feb 2.
6
An overview of recent advancements in small molecules suppression of oncogenic signaling of K-RAS: an updated review.小分子抑制K-RAS致癌信号传导的最新进展概述:最新综述
Mol Divers. 2024 Dec;28(6):4581-4608. doi: 10.1007/s11030-023-10777-6. Epub 2024 Jan 30.
7
A Review of the Role of Natural Products as Treatment Approaches for Xerostomia.天然产物作为口干症治疗方法的作用综述
Pharmaceuticals (Basel). 2023 Aug 10;16(8):1136. doi: 10.3390/ph16081136.
8
Bacteria as genetically programmable producers of bioactive natural products.细菌作为生物活性天然产物的基因可编程生产者。
Nat Rev Chem. 2020 Apr;4(4):172-193. doi: 10.1038/s41570-020-0176-1. Epub 2020 Mar 23.
9
Rethinking Biosynthesis of Aclacinomycin A.重新思考阿克拉霉素 A 的生物合成。
Molecules. 2023 Mar 18;28(6):2761. doi: 10.3390/molecules28062761.
10
Unnatural activities and mechanistic insights of cytochrome P450 PikC gained from site-specific mutagenesis by non-canonical amino acids.通过非典型氨基酸的定点诱变获得细胞色素 P450 PikC 的非自然活性和机制见解。
Nat Commun. 2023 Mar 25;14(1):1669. doi: 10.1038/s41467-023-37288-0.
ACS Synth Biol. 2015 Jun 19;4(6):723-8. doi: 10.1021/sb500351f. Epub 2014 Dec 8.
4
Biosynthesis of antimycins with a reconstituted 3-formamidosalicylate pharmacophore in Escherichia coli.在大肠杆菌中利用重组的3-甲酰胺基水杨酸药效团生物合成抗霉素
ACS Synth Biol. 2015 May 15;4(5):559-65. doi: 10.1021/sb5003136. Epub 2014 Oct 7.
5
Homology-integrated CRISPR-Cas (HI-CRISPR) system for one-step multigene disruption in Saccharomyces cerevisiae.用于酿酒酵母一步多基因破坏的同源整合CRISPR-Cas(HI-CRISPR)系统。
ACS Synth Biol. 2015 May 15;4(5):585-94. doi: 10.1021/sb500255k. Epub 2014 Sep 19.
6
Biosynthesis of fungal indole alkaloids.真菌吲哚生物碱的生物合成。
Nat Prod Rep. 2014 Oct;31(10):1474-87. doi: 10.1039/c4np00073k.
7
Targeted capture and heterologous expression of the Pseudoalteromonas alterochromide gene cluster in Escherichia coli represents a promising natural product exploratory platform.在大肠杆菌中对嗜盐假交替单胞菌变色菌素基因簇进行靶向捕获和异源表达,是一个很有前景的天然产物探索平台。
ACS Synth Biol. 2015 Apr 17;4(4):414-20. doi: 10.1021/sb500280q. Epub 2014 Aug 29.
8
Assessing the combinatorial potential of the RiPP cyanobactin tru pathway.评估核糖体合成和翻译后修饰的肽类(RiPP)蓝细菌素tru途径的组合潜力。
ACS Synth Biol. 2015 Apr 17;4(4):482-92. doi: 10.1021/sb500267d. Epub 2014 Sep 2.
9
Reprogramming nonribosomal peptide synthetases for "clickable" amino acids.重新编程非核糖体肽合成酶以获得“点击反应”氨基酸。
Angew Chem Int Ed Engl. 2014 Sep 15;53(38):10105-8. doi: 10.1002/anie.201405281. Epub 2014 Jul 31.
10
Probing the phosphopantetheine arm conformations of acyl carrier proteins using vibrational spectroscopy.利用振动光谱探测酰基载体蛋白的磷酸泛酰巯基乙胺臂构象。
J Am Chem Soc. 2014 Aug 13;136(32):11240-3. doi: 10.1021/ja505442h. Epub 2014 Aug 4.