木糖氧化无色杆菌MN001（一种囊性纤维化气道分离株）的全基因组序列
Complete Genome Sequence of Achromobacter xylosoxidans MN001, a Cystic Fibrosis Airway Isolate.
作者信息
Badalamenti Jonathan P, Hunter Ryan C
机构信息
BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.
Department of Microbiology and Immunology, University of Minnesota, Minneapolis, Minnesota, USA
出版信息
Genome Announc. 2015 Aug 20;3(4):e00947-15. doi: 10.1128/genomeA.00947-15.
Abstract
The genome of Achromobacter xylosoxidans MN001, a strain isolated from sputum derived from an adult cystic fibrosis patient, was sequenced using combined single-molecule real-time and Illumina sequencing. Assembly of the complete genome resulted in a 5,876,039-bp chromosome, representing the smallest A. xylosoxidans genome sequenced to date.
摘要
木糖氧化无色杆菌MN001菌株是从一名成年囊性纤维化患者的痰液中分离出来的，其基因组采用单分子实时测序和Illumina测序相结合的方法进行测序。完整基因组的组装产生了一条5,876,039碱基对的染色体，这是迄今为止测序的最小的木糖氧化无色杆菌基因组。
相似文献
1
Complete Genome Sequence of Achromobacter xylosoxidans MN001, a Cystic Fibrosis Airway Isolate.木糖氧化无色杆菌MN001（一种囊性纤维化气道分离株）的全基因组序列
Genome Announc. 2015 Aug 20;3(4):e00947-15. doi: 10.1128/genomeA.00947-15.
2
Severe Achromobacter xylosoxidans infection and loss of sputum bacterial diversity in an adult patient with cystic fibrosis.一名成年囊性纤维化患者发生严重木糖氧化无色杆菌感染及痰液细菌多样性丧失
Paediatr Respir Rev. 2016 Aug;20 Suppl:27-9. doi: 10.1016/j.prrv.2016.06.011. Epub 2016 Jun 15.
3
Draft Genome Sequence of Triclosan-Resistant Cystic Fibrosis Isolate Achromobacter xylosoxidans CF304.耐三氯生的囊性纤维化分离株木糖氧化无色杆菌CF304的基因组序列草图
Genome Announc. 2015 Jul 30;3(4):e00865-15. doi: 10.1128/genomeA.00865-15.
4
Chronic Airway Colonization by Achromobacter xylosoxidans in Cystic Fibrosis Patients Is Not Sustained by Their Domestic Environment.囊性纤维化患者的木糖氧化无色杆菌的慢性气道定植并不受其家庭环境的持续影响。
Appl Environ Microbiol. 2018 Nov 15;84(23). doi: 10.1128/AEM.01739-18. Print 2018 Dec 1.
5
Distribution of the species of Achromobacter in a French Cystic Fibrosis Centre and multilocus sequence typing analysis reveal the predominance of A. xylosoxidans and clonal relationships between some clinical and environmental isolates.在法国囊性纤维化中心，无色杆菌属种的分布和多位点序列分型分析显示，主要为木糖氧化无色杆菌，并且一些临床和环境分离株之间存在克隆关系。
J Cyst Fibros. 2016 Jul;15(4):486-94. doi: 10.1016/j.jcf.2015.12.009. Epub 2016 Jan 8.
6
Epidemic Achromobacter xylosoxidans strain among Belgian cystic fibrosis patients and review of literature.比利时囊性纤维化患者中流行的木糖氧化无色杆菌菌株及文献综述
BMC Microbiol. 2016 Jun 24;16(1):122. doi: 10.1186/s12866-016-0736-1.
7
Pan-Resistant Achromobacter xylosoxidans and Stenotrophomonas maltophilia Infection in Cystic Fibrosis Does Not Reduce Survival After Lung Transplantation.囊性纤维化患者中泛耐药木糖氧化无色杆菌和嗜麦芽窄食单胞菌感染不会降低肺移植后的生存率。
Transplantation. 2015 Oct;99(10):2196-202. doi: 10.1097/TP.0000000000000709.
8
Achromobacter xylosoxidans in cystic fibrosis: prevalence and clinical relevance.木糖氧化无色杆菌在囊性纤维化中的情况：患病率及临床相关性
J Cyst Fibros. 2007 Jan;6(1):75-8. doi: 10.1016/j.jcf.2006.05.011. Epub 2006 Jun 21.
9
Achromobacter xylosoxidans infection in an adult cystic fibrosis unit in Madrid.马德里一家成人囊性纤维化治疗中心的木糖氧化无色杆菌感染
Enferm Infecc Microbiol Clin. 2016 Mar;34(3):184-7. doi: 10.1016/j.eimc.2015.05.006. Epub 2015 Jun 29.
10
Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans.木糖氧化无色杆菌内在和获得性耐药机制的基因组学见解
Antimicrob Agents Chemother. 2015 Feb;59(2):1152-61. doi: 10.1128/AAC.04260-14. Epub 2014 Dec 8.
引用本文的文献
1
A putative enoyl-CoA hydratase contributes to biofilm formation and the antibiotic tolerance of .一种假定的烯酰基辅酶 A 水合酶有助于生物膜的形成和 的抗生素耐受性。
NPJ Biofilms Microbiomes. 2019 Aug 6;5(1):20. doi: 10.1038/s41522-019-0093-6. eCollection 2019.
2
Evidence and Role for Bacterial Mucin Degradation in Cystic Fibrosis Airway Disease.细菌黏蛋白降解在囊性纤维化气道疾病中的证据及作用
PLoS Pathog. 2016 Aug 22;12(8):e1005846. doi: 10.1371/journal.ppat.1005846. eCollection 2016 Aug.
3
Characterization of a novel Achromobacter xylosoxidans specific siphoviruse: phiAxp-1.一种新型木糖氧化无色杆菌特异性肌尾噬菌体的特性研究：phiAxp-1
Sci Rep. 2016 Feb 24;6:21943. doi: 10.1038/srep21943.
本文引用的文献
1
Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq.使用breseq从短读重测序数据中识别单倍体微生物基因组中的结构变异。
BMC Genomics. 2014 Nov 29;15(1):1039. doi: 10.1186/1471-2164-15-1039.
2
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
3
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
4
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes.囊性纤维化病原体产木糖氧化无色杆菌 NH44784-1996 的全基因组序列符合重要的致病表型。
PLoS One. 2013 Jul 22;8(7):e68484. doi: 10.1371/journal.pone.0068484. Print 2013.
5
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
6
Achromobacter xylosoxidans respiratory tract infection in cystic fibrosis patients.木糖氧化无色杆菌引起的囊性纤维化患者呼吸道感染。
Eur J Clin Microbiol Infect Dis. 2011 Aug;30(8):973-80. doi: 10.1007/s10096-011-1182-5. Epub 2011 Jan 31.
7
Chronic infection with Achromobacter xylosoxidans in cystic fibrosis patients; a retrospective case control study.囊性纤维化患者感染木糖氧化无色杆菌的慢性感染；一项回顾性病例对照研究。
J Cyst Fibros. 2006 Dec;5(4):245-51. doi: 10.1016/j.jcf.2006.04.002. Epub 2006 Jun 13.
8
Shared genotypes of Achromobacter xylosoxidans strains isolated from patients at a cystic fibrosis rehabilitation center.从一家囊性纤维化康复中心的患者中分离出的木糖氧化无色杆菌菌株的共享基因型。
J Clin Microbiol. 2005 Jun;43(6):2998-3002. doi: 10.1128/JCM.43.6.2998-3002.2005.
9
Identification and antimicrobial susceptibility of Alcaligenes xylosoxidans isolated from patients with cystic fibrosis.从囊性纤维化患者中分离出的木糖氧化产碱杆菌的鉴定及抗菌药敏性
J Clin Microbiol. 2001 Nov;39(11):3942-5. doi: 10.1128/JCM.39.11.3942-3945.2001.
Zotero 插件