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基于核磁共振的代谢组学在利用斑马贻贝对五大湖进行环境评估中的应用。

Application of NMR-based metabolomics for environmental assessment in the Great Lakes using zebra mussel ().

作者信息

Watanabe Miki, Meyer Kathryn A, Jackson Tyler M, Schock Tracey B, Johnson W Edward, Bearden Daniel W

机构信息

Chemical Sciences Division, Hollings Marine Laboratory, National Institute of Standards and Technology, 331 Ft. Johnson Rd., Charleston, SC USA.

NOAA Mussel Watch Program, National Oceanic & Atmospheric Administration, National Centers for Coastal Ocean Science, 1305 East West Highway, SSMC4, Room 9202, Silver Spring, MD 20910 USA.

出版信息

Metabolomics. 2015;11(5):1302-1315. doi: 10.1007/s11306-015-0789-4. Epub 2015 Feb 21.

Abstract

Zebra mussel, , in the Great Lakes is being monitored as a bio-indicator organism for environmental health effects by the National Oceanic and Atmospheric Administration's Mussel Watch program. In order to monitor the environmental effects of industrial pollution on the ecosystem, invasive zebra mussels were collected from four stations-three inner harbor sites (LMMB4, LMMB1, and LMMB) in Milwaukee Estuary, and one reference site (LMMB5) in Lake Michigan, Wisconsin. Nuclear magnetic resonance (NMR)-based metabolomics was used to evaluate the metabolic profiles of the mussels from these four sites. The objective was to observe whether there were differences in metabolite profiles between impacted sites and the reference site; and if there were metabolic profile differences among the impacted sites. Principal component analyses indicated there was no significant difference between two impacted sites: north Milwaukee harbor (LMMB and LMMB4) and the LMMB5 reference site. However, significant metabolic differences were observed between the impacted site on the south Milwaukee harbor (LMMB1) and the LMMB5 reference site, a finding that correlates with preliminary sediment toxicity results. A total of 26 altered metabolites (including two unidentified peaks) were successfully identified in a comparison of zebra mussels from the LMMB1 site and LMMB5 reference site. The application of both uni- and multivariate analysis not only confirmed the variability of altered metabolites but also ensured that these metabolites were identified via unbiased analysis. This study has demonstrated the feasibility of the NMR-based metabolomics approach to assess whole-body metabolomics of zebra mussels to study the physiological impact of toxicant exposure at field sites.

摘要

斑马贻贝在五大湖地区正作为生物指示生物,由美国国家海洋和大气管理局的贻贝监测项目对其环境健康影响进行监测。为了监测工业污染对生态系统的环境影响,从四个站点采集了入侵的斑马贻贝:密尔沃基河口的三个内港站点(LMMB4、LMMB1和LMMB),以及威斯康星州密歇根湖的一个参考站点(LMMB5)。基于核磁共振(NMR)的代谢组学被用于评估来自这四个站点的贻贝的代谢谱。目的是观察受影响站点和参考站点之间代谢物谱是否存在差异;以及受影响站点之间是否存在代谢谱差异。主成分分析表明,两个受影响站点:密尔沃基北部港口(LMMB和LMMB4)与LMMB5参考站点之间没有显著差异。然而,在密尔沃基南部港口的受影响站点(LMMB1)与LMMB5参考站点之间观察到了显著的代谢差异,这一发现与初步的沉积物毒性结果相关。在比较LMMB1站点和LMMB5参考站点的斑马贻贝时,共成功鉴定出26种变化的代谢物(包括两个未鉴定的峰)。单变量和多变量分析的应用不仅证实了变化代谢物的变异性,还确保了这些代谢物是通过无偏分析鉴定出来的。这项研究证明了基于NMR的代谢组学方法用于评估斑马贻贝全身代谢组学以研究现场有毒物质暴露的生理影响的可行性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab36/4559106/cd9443a36fc3/11306_2015_789_Fig1_HTML.jpg

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