Singh Dharmesh, Takahashi Koichi, Park Jungok, Adams Jonathan M
Environmental Genomics Division, CSIR-NEERI, Nehru Marg, Nagpur, 440020, India.
Department of Biology, Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, 390-8621, Japan.
Microb Ecol. 2016 Feb;71(2):428-41. doi: 10.1007/s00248-015-0681-9. Epub 2015 Sep 30.
The community ecology, abundance, and diversity patterns of soil archaea are poorly understood-despite the fact that they are a major branch of life that is ubiquitous and important in nitrogen cycling in terrestrial ecosystems. We set out to investigate the elevational patterns of archaeal ecology, and how these compare with other groups of organisms. Many studies of different groups of organisms (plants, birds, etc.) have shown a series of distinct communities with elevation, and often a diversity maximum in mid-elevations. We investigated the soil archaeal communities on Mt. Norikura, Japan, using 454 pyrosequencing of the 16S ribosomal RNA (rRNA) gene. There was a strong mid-elevation maximum in diversity, and a mid-elevation maximum in abundance of soil archaea 16S rRNA and amoA genes. These diversity and abundance maximums could not be correlated with any identifiable soil parameter, nor plant diversity. Discrete, predictable communities of archaea occurred at each elevational level, also not explicable in terms of pH or major nutrients. When we compared the archaeal community and diversity patterns with those found in an earlier study of Mt Fuji, both mountains showed mid-elevation maximums in diversity and abundance of archaea, possibly a result of some common environmental factor such as soil disturbance frequency. However, they showed distinct sets of archaeal communities at similar elevational sampling points. Presumably, the difference reflects their distinct geology (Norikura being andesitic, while Fuji is basaltic) and the resulting combinations of soil chemistry and environmental conditions, although no explanatory variable was found. Clearly, many soil archaea have strongly defined niches and will only occur in a narrow subset of the range of possible climate and soil conditions. The findings of a mid-elevation diversity maximum on Norikura provides a further instance of how widespread this unexplained pattern is in nature, in a wide variety of groups of organisms.
尽管土壤古菌是生命的一个主要分支,在陆地生态系统的氮循环中无处不在且十分重要,但人们对其群落生态、丰度和多样性模式却知之甚少。我们着手研究古菌生态的海拔模式,以及它们与其他生物类群的比较情况。许多针对不同生物类群(植物、鸟类等)的研究表明,随着海拔升高会出现一系列不同的群落,且通常在海拔中部多样性达到最大值。我们利用对16S核糖体RNA(rRNA)基因进行454焦磷酸测序的方法,对日本乘鞍岳的土壤古菌群落进行了调查。土壤古菌16S rRNA和amoA基因的多样性和丰度在海拔中部均出现了明显的最大值。这些多样性和丰度的最大值与任何可识别的土壤参数或植物多样性均无关联。在每个海拔水平都出现了离散的、可预测的古菌群落,这也无法用pH值或主要养分来解释。当我们将古菌群落和多样性模式与早期对富士山的研究结果进行比较时,两座山的古菌多样性和丰度在海拔中部均出现了最大值,这可能是由一些共同的环境因素导致的,比如土壤扰动频率。然而,在相似的海拔采样点,它们显示出不同的古菌群落。据推测,这种差异反映了它们不同的地质情况(乘鞍岳为安山岩,而富士山为玄武岩)以及由此产生的土壤化学和环境条件的组合,尽管未找到解释变量。显然,许多土壤古菌具有明确的生态位,只会出现在可能的气候和土壤条件范围的一个狭窄子集中。乘鞍岳海拔中部多样性最大值的发现,进一步说明了这种无法解释的模式在自然界中广泛存在于各种生物类群中。