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心血管连续共病的基因组研究

Genomic Study of Cardiovascular Continuum Comorbidity.

作者信息

Makeeva O A, Sleptsov A A, Kulish E V, Barbarash O L, Mazur A M, Prokhorchuk E B, Chekanov N N, Stepanov V A, Puzyrev V P

机构信息

Research Institute of Medical Genetics, Nab. Ushayki, 10, Tomsk, 634050, Russia ; Research Institute for Complex Issues of Cardiovascular Diseases, Sosnovy Blvd., 6, Kemerovo, 650000, Russia.

Research Institute of Medical Genetics, Nab. Ushayki, 10, Tomsk, 634050, Russia.

出版信息

Acta Naturae. 2015 Jul-Sep;7(3):89-99.

Abstract

Comorbidity or a combination of several diseases in the same individual is a common and widely investigated phenomenon. However, the genetic background for non-random disease combinations is not fully understood. Modern technologies and approaches to genomic data analysis enable the investigation of the genetic profile of patients burdened with several diseases (polypathia, disease conglomerates) and its comparison with the profiles of patients with single diseases. An association study featuring three groups of patients with various combinations of cardiovascular disorders and a control group of relatively healthy individuals was conducted. Patients were selected as follows: presence of only one disease, ischemic heart disease (IHD); a combination of two diseases, IHD and arterial hypertension (AH); and a combination of several diseases, including IHD, AH, type 2 diabetes mellitus (T2DM), and hypercholesterolemia (HC). Genotyping was performed using the "My Gene" genomic service (www.i-gene.ru). An analysis of 1,400 polymorphic genetic variants and their associations with the studied phenotypes are presented. A total of 14 polymorphic variants were associated with the phenotype "IHD only," including those in the APOB, CD226, NKX2-5, TLR2, DPP6, KLRB1, VDR, SCARB1, NEDD4L, and SREBF2 genes, and intragenic variants rs12487066, rs7807268, rs10896449, and rs944289. A total of 13 genetic markers were associated with the "IHD and AH" phenotype, including variants in the BTNL2, EGFR, CNTNAP2, SCARB1, and HNF1A genes, and intragenic polymorphisms rs801114, rs10499194, rs13207033, rs2398162, rs6501455, and rs1160312. A total of 14 genetic variants were associated with a combination of several diseases of cardiovascular continuum (CVC), including those in the TAS2R38, SEZ6L, APOA2, KLF7, CETP, ITGA4, RAD54B, LDLR, and MTAP genes, along with intragenic variants rs1333048, rs1333049, and rs6501455. One common genetic marker was identified for the "IHD only" and "IHD and AH" phenotypes: rs4765623 in the SCARB1 gene; two common genetic markers, rs663048 in SEZ6L and intragenic rs6501455, were identified for the "IHD and AH" phenotype and a combination of several diseases (syntropy); there were no common genetic markers for the "syntropy" and "IHD only" phenotypes. Classificatory analysis of the relationships between the associated genes and metabolic pathways revealed that lipid-metabolizing genes are involved in the development of all three CVC variants, whereas immunity-response genes are specific to the "IHD only" phenotype. The study demonstrated that comorbidity presents additional challenges in association studies of disease predisposition, since the genetic profile of combined forms of pathology can be markedly different from those for isolated "single" forms of a disease.

摘要

共病,即同一个体患有几种疾病的组合,是一种常见且被广泛研究的现象。然而,非随机疾病组合的遗传背景尚未完全明确。现代基因组数据分析技术和方法能够对患有多种疾病(多病共存、疾病聚合)的患者的遗传特征进行研究,并将其与患有单一疾病的患者的特征进行比较。开展了一项关联研究,该研究纳入了三组患有不同心血管疾病组合的患者以及一组相对健康的个体作为对照组。患者的选择如下:仅患有一种疾病,即缺血性心脏病(IHD);患有两种疾病的组合,即IHD和动脉高血压(AH);以及患有多种疾病的组合,包括IHD、AH、2型糖尿病(T2DM)和高胆固醇血症(HC)。使用“My Gene”基因组服务(www.i - gene.ru)进行基因分型。本文呈现了对1400个多态性基因变体及其与所研究表型的关联分析。共有14个多态性变体与“仅IHD”表型相关,包括载脂蛋白B(APOB)、CD226、NKX2 - 5、Toll样受体2(TLR2)、二肽基肽酶6(DPP6)、杀伤细胞凝集素样受体亚家族B成员1(KLRB1)、维生素D受体(VDR)、清道夫受体B1(SCARB1)、NEDD4类泛素蛋白连接酶2(NEDD4L)和固醇调节元件结合转录因子2(SREBF2)基因中的变体,以及基因内变体rs1248706, rs7807268, rs10896449和rs944289。共有13个遗传标记与“IHD和AH”表型相关,包括BTNL2、表皮生长因子受体(EGFR)、接触蛋白相关蛋白2(CNTNAP2)、SCARB1和肝细胞核因子1α(HNF1A)基因中的变体,以及基因内多态性rs801114、rs10499194、rs13207033、rs2398162、rs6501455和rs1160312。共有14个基因变体与心血管连续体(CVC)的几种疾病组合相关,包括味觉受体2型成员38(TAS2R38)、含硒蛋白6样蛋白(SEZ6L)、载脂蛋白A2(APOA2)、 Kruppel样因子7(KLF7)、胆固醇酯转运蛋白(CETP)、整合素α4(ITGA4)、RAD54B、低密度脂蛋白受体(LDLR)和甲基硫代腺苷磷酸化酶(MTAP)基因中的变体,以及基因内变体rs1333048、rs1333049和rs6501455。为“仅IHD”和“IHD和AH”表型鉴定出一个共同的遗传标记:SCARB1基因中的rs4765623;为“IHD和AH”表型以及几种疾病的组合(协同作用)鉴定出两个共同的遗传标记,即SEZ6L中的rs663048和基因内的rs6501455;“协同作用”和“仅IHD”表型之间没有共同的遗传标记。对相关基因与代谢途径之间关系的分类分析表明,脂质代谢基因参与了所有三种CVC变体的发生发展,而免疫反应基因则特定于“仅IHD”表型。该研究表明,共病在疾病易感性关联研究中带来了额外的挑战,因为病理组合形式的遗传特征可能与孤立的“单一”疾病形式的遗传特征明显不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/add7/4610169/216f009c74cd/AN20758251-26-089-g001.jpg

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