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采用非培养方法对印度梅加拉亚邦贾克雷姆温泉的微生物多样性进行调查。

Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach.

作者信息

Panda Amrita Kumari, Bisht Satpal Singh, Kumar Nachimuthu Senthil, De Mandal Surajit

机构信息

Department of Zoology, Kumaun University, Nainital 263002, Uttarakhand, India.

Department of Biotechnology, Mizoram University, Aizawl 796004, Mizoram, India.

出版信息

Genom Data. 2015 Apr 28;4:156-7. doi: 10.1016/j.gdata.2015.04.016. eCollection 2015 Jun.

Abstract

Jakrem hot water spring is located in the West Khasi Hill District of the state of Meghalaya, and is one of the most popular hot springs of the state. There is a populist belief among the inhabitants and people that the hot spring water has got curative properties against various skin ailments. This is the first report on V3 hyper-variable region of 16S rDNA metagenome sequence employing Illumina platform to profile the microbial community of this less known hot spring from Meghalaya, India. Metagenome comprised of 10, 74,120 raw sequences with a sequence length of 151 bp and 56.35% G + C content. Metagenome sequence information is now available at NCBI, SRA database accession no. SRP056897. A total of 8, 77, 364 pre-processed reads were clustered into 694 OTUs (operational taxonomical units) comprising of 14 bacterial phyla including unknown phylum demonstrating 49 families. Hot spring bacterial community is dominated by Firmicutes (61.60%), Chloroflexi (21.37%), Cyanobacteria (12.96%) and unclassified bacteria (1.2%) respectively.

摘要

贾克雷姆温泉位于梅加拉亚邦西卡西丘陵区,是该邦最受欢迎的温泉之一。当地居民和民众普遍认为温泉水对各种皮肤病有治疗作用。这是首篇利用Illumina平台对来自印度梅加拉亚邦这个鲜为人知的温泉的微生物群落进行16S rDNA宏基因组序列V3高变区分析的报告。宏基因组由1074120条原始序列组成,序列长度为151 bp,G + C含量为56.35%。宏基因组序列信息现已存入NCBI的SRA数据库,登录号为SRP056897。总共877364条预处理读数被聚类到694个操作分类单元(OTU)中,这些OTU由14个细菌门组成,包括一个未知门,共显示出49个科。温泉细菌群落分别以厚壁菌门(61.60%)、绿弯菌门(21.37%)、蓝细菌(12.96%)和未分类细菌(1.2%)为主。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0c07/4535621/347e0ab849c8/gr1.jpg

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