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本文引用的文献

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Identification and expression patterns of novel long non-coding RNAs in neural progenitors of the developing mammalian cortex.发育中哺乳动物皮质神经祖细胞中新型长链非编码RNA的鉴定与表达模式
Neurogenesis (Austin). 2015 Apr 11;2(1):e995524. doi: 10.1080/23262133.2014.995524. eCollection 2015.
2
The circular RNA Cdr1as, via miR-7 and its targets, regulates insulin transcription and secretion in islet cells.环状RNA Cdr1as通过miR-7及其靶标调节胰岛细胞中的胰岛素转录和分泌。
Sci Rep. 2015 Jul 27;5:12453. doi: 10.1038/srep12453.
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Circular RNAs: Identification, biogenesis and function.环状RNA:鉴定、生物发生及功能
Biochim Biophys Acta. 2016 Jan;1859(1):163-8. doi: 10.1016/j.bbagrm.2015.07.007. Epub 2015 Jul 11.
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Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain.长链非编码RNA在小鼠大脑中的时空表达及转录扰动
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Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.哺乳动物脑中的环状 RNA 丰度高、保守且表达具有动态性。
Mol Cell. 2015 Jun 4;58(5):870-85. doi: 10.1016/j.molcel.2015.03.027. Epub 2015 Apr 23.
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Non-coding RNA in neural function, disease, and aging.非编码 RNA 在神经功能、疾病和衰老中的作用。
Front Genet. 2015 Mar 9;6:87. doi: 10.3389/fgene.2015.00087. eCollection 2015.
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The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.长链非编码RNA Pnky调节胚胎期和出生后神经干细胞的神经元分化。
Cell Stem Cell. 2015 Apr 2;16(4):439-447. doi: 10.1016/j.stem.2015.02.007. Epub 2015 Mar 19.
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Transcriptome analyses of adult mouse brain reveal enrichment of lncRNAs in specific brain regions and neuronal populations.成年鼠脑转录组分析显示长非编码 RNA 在特定脑区和神经元群体中的富集。
Front Cell Neurosci. 2015 Mar 6;9:63. doi: 10.3389/fncel.2015.00063. eCollection 2015.
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The RNA binding protein quaking regulates formation of circRNAs.RNA 结合蛋白 quaking 调控 circRNAs 的形成。
Cell. 2015 Mar 12;160(6):1125-34. doi: 10.1016/j.cell.2015.02.014.
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Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.单细胞分析揭示了人类皮质中神经祖细胞的转录异质性。
Nat Neurosci. 2015 May;18(5):637-46. doi: 10.1038/nn.3980. Epub 2015 Mar 3.

皮质发生中的长链非编码RNA:解读大脑的非编码密码。

Long non-coding RNAs in corticogenesis: deciphering the non-coding code of the brain.

作者信息

Aprea Julieta, Calegari Federico

机构信息

DFG-Research Center and Cluster of Excellence for Regenerative Therapies, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany.

DFG-Research Center and Cluster of Excellence for Regenerative Therapies, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany

出版信息

EMBO J. 2015 Dec 2;34(23):2865-84. doi: 10.15252/embj.201592655. Epub 2015 Oct 29.

DOI:10.15252/embj.201592655
PMID:26516210
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4687686/
Abstract

Evidence on the role of long non-coding (lnc) RNAs has been accumulating over decades, but it has been only recently that advances in sequencing technologies have allowed the field to fully appreciate their abundance and diversity. Despite this, only a handful of lncRNAs have been phenotypically or mechanistically studied. Moreover, novel lncRNAs and new classes of RNAs are being discovered at growing pace, suggesting that this class of molecules may have functions as diverse as protein-coding genes. Interestingly, the brain is the organ where lncRNAs have the most peculiar features including the highest number of lncRNAs that are expressed, proportion of tissue-specific lncRNAs and highest signals of evolutionary conservation. In this work, we critically review the current knowledge about the steps that have led to the identification of the non-coding transcriptome including the general features of lncRNAs in different contexts in terms of both their genomic organisation, evolutionary origin, patterns of expression, and function in the developing and adult mammalian brain.

摘要

几十年来,关于长链非编码(lnc)RNA作用的证据不断积累,但直到最近,测序技术的进步才使该领域充分认识到它们的丰富性和多样性。尽管如此,只有少数lncRNA在表型或机制上得到了研究。此外,新的lncRNA和新的RNA类别正以越来越快的速度被发现,这表明这类分子可能具有与蛋白质编码基因一样多样的功能。有趣的是,大脑是lncRNA具有最独特特征的器官,包括表达的lncRNA数量最多、组织特异性lncRNA的比例以及进化保守性的最高信号。在这项工作中,我们批判性地回顾了目前关于导致非编码转录组鉴定的步骤的知识,包括lncRNA在不同背景下的一般特征,涉及它们的基因组组织、进化起源、表达模式以及在发育中和成年哺乳动物大脑中的功能。