Aprea Julieta, Calegari Federico
DFG-Research Center and Cluster of Excellence for Regenerative Therapies, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany.
DFG-Research Center and Cluster of Excellence for Regenerative Therapies, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany
EMBO J. 2015 Dec 2;34(23):2865-84. doi: 10.15252/embj.201592655. Epub 2015 Oct 29.
Evidence on the role of long non-coding (lnc) RNAs has been accumulating over decades, but it has been only recently that advances in sequencing technologies have allowed the field to fully appreciate their abundance and diversity. Despite this, only a handful of lncRNAs have been phenotypically or mechanistically studied. Moreover, novel lncRNAs and new classes of RNAs are being discovered at growing pace, suggesting that this class of molecules may have functions as diverse as protein-coding genes. Interestingly, the brain is the organ where lncRNAs have the most peculiar features including the highest number of lncRNAs that are expressed, proportion of tissue-specific lncRNAs and highest signals of evolutionary conservation. In this work, we critically review the current knowledge about the steps that have led to the identification of the non-coding transcriptome including the general features of lncRNAs in different contexts in terms of both their genomic organisation, evolutionary origin, patterns of expression, and function in the developing and adult mammalian brain.
几十年来,关于长链非编码(lnc)RNA作用的证据不断积累,但直到最近,测序技术的进步才使该领域充分认识到它们的丰富性和多样性。尽管如此,只有少数lncRNA在表型或机制上得到了研究。此外,新的lncRNA和新的RNA类别正以越来越快的速度被发现,这表明这类分子可能具有与蛋白质编码基因一样多样的功能。有趣的是,大脑是lncRNA具有最独特特征的器官,包括表达的lncRNA数量最多、组织特异性lncRNA的比例以及进化保守性的最高信号。在这项工作中,我们批判性地回顾了目前关于导致非编码转录组鉴定的步骤的知识,包括lncRNA在不同背景下的一般特征,涉及它们的基因组组织、进化起源、表达模式以及在发育中和成年哺乳动物大脑中的功能。