Blankenship Elise, Vahedi-Faridi Ardeschir, Lodowski David T
Department of Nutrition, Case Western Reserve University School of Medicine, 10900 Euclid Avenue, Cleveland, OH 44106, USA; Center for Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
Department of Pharmacology, Case Western Reserve University School of Medicine, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
Structure. 2015 Dec 1;23(12):2358-2364. doi: 10.1016/j.str.2015.09.015. Epub 2015 Oct 29.
Rhodopsin, a light-activated G protein coupled receptor (GPCR), has been the subject of numerous biochemical and structural investigations, serving as a model receptor for GPCRs and their activation. We present the 2.3-Å resolution structure of native source rhodopsin stabilized in a conformation competent for G protein binding. An extensive water-mediated hydrogen bond network linking the chromophore binding site to the site of G protein binding is observed, providing connections to conserved motifs essential for GPCR activation. Comparison of this extensive solvent-mediated hydrogen-bonding network with the positions of ordered solvent in earlier crystallographic structures of rhodopsin photointermediates reveals both static structural and dynamic functional water-protein interactions present during the activation process. When considered along with observations that solvent occupies similar positions in the structures of other GPCRs, these analyses strongly support an integral role for this dynamic ordered water network in both rhodopsin and GPCR activation.
视紫红质是一种光激活的G蛋白偶联受体(GPCR),一直是众多生化和结构研究的对象,作为GPCR及其激活的模型受体。我们展示了天然来源视紫红质的2.3埃分辨率结构,该结构稳定在一种能够与G蛋白结合的构象中。观察到一个广泛的水介导氢键网络,将发色团结合位点与G蛋白结合位点相连,为GPCR激活所必需的保守基序提供了联系。将这个广泛的溶剂介导氢键网络与视紫红质光中间体早期晶体结构中有序溶剂的位置进行比较,揭示了激活过程中存在的静态结构和动态功能水-蛋白相互作用。当与其他GPCR结构中溶剂占据相似位置的观察结果一起考虑时,这些分析有力地支持了这个动态有序水网络在视紫红质和GPCR激活中都起着不可或缺的作用。