Yan Shi, Jin Chunsheng, Wilson Iain B H, Paschinger Katharina
Department für Chemie, Universität für Bodenkultur , 1190 Wien, Austria.
Institutionen för Biomedicin, Göteborgs Universitet , 405 30 Göteborg, Sweden.
J Proteome Res. 2015 Dec 4;14(12):5291-305. doi: 10.1021/acs.jproteome.5b00746. Epub 2015 Nov 24.
Recent studies have shown a remarkable degree of plasticity in the N-glycome of the model nematode Caenorhabditis elegans; ablation of glycosylation-relevant genes can result in radically altered N-glycan profiles despite only minor biological phenotypic effects. Up to four fucose residues and five different linkages of fucose are known on the N-glycans of C. elegans. Due to the complexity in the wild type, we established three mutant strains defective in two core fucosyltransferases each (fut-1;fut-6, fut-1;fut-8, and fut-6;fut-8). Enzymatically released N-glycans were subject to HPLC and MALDI-TOF MS/MS, in combination with various treatments, to verify structural details. The N-glycome of the fut-1;fut-6 mutant was the most complex of the three double-mutant strains due to the extension of the core α1,6-fucose as well as the presence of fucose on the bisecting galactose. In contrast, maximally two fucoses were found on N-glycans of the fut-1;fut-8 and fut-6;fut-8 strains. The different locations and capping of fucose meant that up to 13 isomeric structures, many highly galactosylated, were determined for some single masses. These data not only show the high variability of the N-glycomic capacity of a "simple" nematode but also exemplify the need for multiple approaches to reveal individual glycan structures within complex invertebrate glycomes.
最近的研究表明,模式线虫秀丽隐杆线虫的N-聚糖组具有显著程度的可塑性;尽管对生物学表型影响较小,但糖基化相关基因的缺失会导致N-聚糖谱发生根本性改变。在秀丽隐杆线虫的N-聚糖上,已知多达四个岩藻糖残基和五种不同的岩藻糖连接方式。由于野生型的复杂性,我们建立了三个突变株系,每个株系分别缺失两种核心岩藻糖基转移酶(fut-1;fut-6、fut-1;fut-8和fut-6;fut-8)。将酶解释放的N-聚糖进行高效液相色谱(HPLC)和基质辅助激光解吸电离飞行时间串联质谱(MALDI-TOF MS/MS)分析,并结合各种处理方法,以验证结构细节。fut-1;fut-6突变体的N-聚糖组是三个双突变株系中最复杂的,这是由于核心α1,6-岩藻糖的延伸以及平分半乳糖上存在岩藻糖。相比之下,在fut-1;fut-8和fut-6;fut-8株系的N-聚糖上最多发现两个岩藻糖。岩藻糖的不同位置和封端意味着,对于某些单质量数,确定了多达13种异构体结构,其中许多是高度半乳糖基化的。这些数据不仅显示了“简单”线虫N-聚糖组能力的高度变异性,还例证了需要多种方法来揭示复杂无脊椎动物聚糖组内的单个聚糖结构。