Orłowska Małgorzata, Barua Drishtee, Piłsyk Sebastian, Muszewska Anna
Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5A, 02-106, Warsaw, Poland.
Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Zwirki i Wigury 101, 02-089, Warsaw, Poland.
IMA Fungus. 2023 Sep 5;14(1):17. doi: 10.1186/s43008-023-00123-8.
Fucose is a deoxyhexose sugar present and studied in mammals. The process of fucosylation has been the primary focus in studies relating to fucose in animals due to the presence of fucose in Lewis antigens. Very few studies have reported its presence in Fungi, mostly in Mucoromycotina. The constitution of 25% and 12% of this sugar in the carbohydrates of cell wall in the respective Umbelopsis and Mucorales strains boosts the need to bridge the gap of knowledge on fucose metabolism across the fungal tree of life. In the absence of a network map involving fucose proteins, we carried out an in-silico approach to construct the fucose metabolic map in Fungi. We analyzed the taxonomic distribution of 85 protein families in Fungi including diverse early diverging fungal lineages. The expression of fucose-related protein-coding genes proteins was validated with the help of transcriptomic data originating from representatives of early diverging fungi. We found proteins involved in several metabolic activities apart from fucosylation such as synthesis, transport and binding. Most of the identified protein families are shared with Metazoa suggesting an ancestral origin in Opisthokonta. However, the overall complexity of fucose metabolism is greater in Metazoa than in Fungi. Massive gene loss has shaped the evolutionary history of these metabolic pathways, leading to a repeated reduction of these pathways in most yeast-forming lineages. Our results point to a distinctive mode of utilization of fucose among fungi belonging to Dikarya and the early diverging lineages. We speculate that, while Dikarya used fucose as a source of nutrients for metabolism, the early diverging group of fungi depended on fucose as a building block and signaling compound.
岩藻糖是一种存在于哺乳动物体内并已得到研究的脱氧己糖。由于岩藻糖存在于刘易斯抗原中,岩藻糖基化过程一直是动物岩藻糖相关研究的主要焦点。很少有研究报道其在真菌中的存在,主要集中在毛霉亚门。在伞形霉属和毛霉目菌株的细胞壁碳水化合物中,这种糖分别占25%和12%,这凸显了弥合整个真菌生命树中岩藻糖代谢知识差距的必要性。在缺乏涉及岩藻糖蛋白的网络图的情况下,我们采用计算机模拟方法构建真菌中的岩藻糖代谢图。我们分析了真菌中85个蛋白家族的分类分布,包括不同的早期分化真菌谱系。利用来自早期分化真菌代表的转录组数据验证了岩藻糖相关蛋白编码基因的表达。我们发现除了岩藻糖基化外,还有几种代谢活动涉及的蛋白质,如合成、运输和结合。大多数已鉴定的蛋白家族与后生动物共有,这表明在 opisthokonta 中有一个祖先起源。然而,后生动物中岩藻糖代谢的总体复杂性比真菌中更高。大量的基因丢失塑造了这些代谢途径的进化历史,导致在大多数形成酵母的谱系中这些途径反复减少。我们的结果表明,在双核菌纲和早期分化谱系的真菌中,岩藻糖的利用方式存在显著差异。我们推测,虽然双核菌纲将岩藻糖用作代谢的营养来源,但早期分化的真菌群体则依赖岩藻糖作为构建模块和信号化合物。