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论序列的起源。

On the Origin of Sequence.

作者信息

Gulik Peter T S van der

机构信息

Centrum Wiskunde & Informatica, P.O.Box 94079, 1090 GB Amsterdam, The Netherlands.

出版信息

Life (Basel). 2015 Nov 16;5(4):1629-37. doi: 10.3390/life5041629.

Abstract

Three aspects which make planet Earth special, and which must be taken in consideration with respect to the emergence of peptides, are the mineralogical composition, the Moon which is in the same size class, and the triple environment consisting of ocean, atmosphere, and continent. GlyGly is a remarkable peptide because it stimulates peptide bond formation in the Salt-Induced Peptide Formation reaction. The role glycine and aspartic acid play in the active site of RNA polymerase is remarkable too. GlyGly might have been the original product of coded peptide synthesis because of its importance in stimulating the production of oligopeptides with a high aspartic acid content, which protected small RNA molecules by binding Mg2+ ions. The feedback loop, which is closed by having RNA molecules producing GlyGly, is proposed as the essential element fundamental to life. Having this system running, longer sequences could evolve, gradually solving the problem of error catastrophe. The basic structure of the standard genetic code (8 fourfold degenerate codon boxes and 8 split codon boxes) is an example of the way information concerning the emergence of life is frozen in the biological constitution of organisms: the structure of the code contains historical information.

摘要

使地球这颗行星变得特殊且在肽的出现方面必须予以考虑的三个方面是矿物组成、大小相当的月球以及由海洋、大气和大陆构成的三重环境。甘氨酰甘氨酸是一种非凡的肽,因为它在盐诱导肽形成反应中刺激肽键形成。甘氨酸和天冬氨酸在RNA聚合酶活性位点所起的作用也很显著。甘氨酰甘氨酸可能是编码肽合成的原始产物,因为它在刺激高天冬氨酸含量寡肽的产生方面具有重要性,这些寡肽通过结合镁离子来保护小RNA分子。由RNA分子产生甘氨酰甘氨酸而形成的反馈回路被认为是生命的基本要素。有了这个运行的系统,更长的序列就能进化,逐步解决错误灾难问题。标准遗传密码的基本结构(8个四重简并密码子盒和8个分裂密码子盒)是有关生命起源的信息如何在生物体的生物学构成中固定下来的一个例子:密码的结构包含历史信息。

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