• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

“牙龈拟杆菌(暂定名)”的基因组序列草图,该菌是在牙周炎患者口腔微生物群中发现的拟杆菌门新成员。

Draft Genome Sequence of "Candidatus Bacteroides periocalifornicus," a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients.

作者信息

McLean Jeffrey S, Liu Quanhui, Thompson John, Edlund Anna, Kelley Scott

机构信息

Department of Periodontics, University of Washington, Seattle, Washington, USA

Department of Periodontics, University of Washington, Seattle, Washington, USA.

出版信息

Genome Announc. 2015 Dec 23;3(6):e01485-15. doi: 10.1128/genomeA.01485-15.

DOI:10.1128/genomeA.01485-15
PMID:26701081
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4691655/
Abstract

Here we present the draft genome of a distantly related member within the phylum Bacteriodetes, "Candidatus Bacteroides periocalifornicus." The draft genome sequence was assembled with metagenomic data from a patient with periodontitis. The closest relative has less than 68% average nucleic identity, supporting a novel family within Bacteriodetes.

摘要

在此,我们展示了拟杆菌门中一个远亲成员“牙龈拟杆菌(暂名)”的基因组草图。该基因组草图序列是利用一名牙周炎患者的宏基因组数据组装而成的。其亲缘关系最近的物种平均核苷酸同一性低于68%,这支持了拟杆菌门内一个新科的存在。

相似文献

1
Draft Genome Sequence of "Candidatus Bacteroides periocalifornicus," a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients.“牙龈拟杆菌(暂定名)”的基因组序列草图,该菌是在牙周炎患者口腔微生物群中发现的拟杆菌门新成员。
Genome Announc. 2015 Dec 23;3(6):e01485-15. doi: 10.1128/genomeA.01485-15.
2
Enrichment of anaerobic nitrate-dependent methanotrophic 'Candidatus Methanoperedens nitroreducens' archaea from an Italian paddy field soil.从意大利稻田土壤中富集厌氧硝酸盐依赖型甲烷营养型“候选嗜硝酸盐甲烷还原菌”古菌。
Appl Microbiol Biotechnol. 2017 Sep;101(18):7075-7084. doi: 10.1007/s00253-017-8416-0. Epub 2017 Aug 4.
3
Draft Genome Sequence of a Novel Marine Anaerobic Ammonium-Oxidizing Bacterium, " Scalindua sp.".新型海洋厌氧氨氧化细菌“Scalindua sp.”的基因组序列草图
Microbiol Resour Announc. 2019 May 16;8(20):e00297-19. doi: 10.1128/MRA.00297-19.
4
Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum Proteobacteria).内共生菌“候选壮丽鲁氏菌”UCD-CM(变形菌门)的基因组序列草图
Genome Announc. 2014 Jul 17;2(4):e00717-14. doi: 10.1128/genomeA.00717-14.
5
Draft Genome Sequence of " Bathyarchaeota" Archaeon BE326-BA-RLH, an Uncultured Denitrifier and Putative Anaerobic Methanotroph from South Africa's Deep Continental Biosphere.“深古菌门”古菌BE326-BA-RLH的基因组草图序列,该古菌来自南非深部大陆生物圈,是一种未培养的反硝化菌和潜在的厌氧甲烷氧化菌。
Microbiol Resour Announc. 2018 Nov 21;7(20). doi: 10.1128/MRA.01295-18. eCollection 2018 Nov.
6
Draft genome of a novel chlorobi member assembled by tetranucleotide binning of a hot spring metagenome.通过温泉宏基因组的四核苷酸分箱组装的新型绿菌门成员的基因组草图。
Genome Announc. 2014 Sep 11;2(5):e00897-14. doi: 10.1128/genomeA.00897-14.
7
Genomic Analysis of a Freshwater Actinobacterium, " Limnosphaera aquatica" Strain IMCC26207, Isolated from Lake Soyang.从昭阳湖分离出的淡水放线菌“水生湖球藻”菌株IMCC26207的基因组分析
J Microbiol Biotechnol. 2017 Apr 28;27(4):825-833. doi: 10.4014/jmb.1701.01047.
8
Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont.溶牙放线菌放线共生亚种菌株XH001(一种口腔TM7附生菌的基础菌)的基因组序列草图
Genome Announc. 2016 Feb 4;4(1):e01685-15. doi: 10.1128/genomeA.01685-15.
9
The metagenome-assembled genome of Candidatus Oenococcus aquikefiri from water kefir represents the species Oenococcus sicerae.水生克菲尔酒球菌的宏基因组组装基因组代表了酒球菌属西克拉亚种。
Food Microbiol. 2020 Jun;88:103402. doi: 10.1016/j.fm.2019.103402. Epub 2019 Dec 27.
10
Single-cell genomics of uncultivated deep-branching magnetotactic bacteria reveals a conserved set of magnetosome genes.未培养的深分支趋磁细菌的单细胞基因组学揭示了一组保守的磁小体基因。
Environ Microbiol. 2016 Jan;18(1):21-37. doi: 10.1111/1462-2920.12907. Epub 2015 Jul 30.

引用本文的文献

1
Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter.古牙垢的宏基因组分析揭示了口腔古菌甲烷短杆菌未被探索的多样性。
Microbiome. 2021 Sep 30;9(1):197. doi: 10.1186/s40168-021-01132-8.
2
Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on and .现代和历史人类口腔微生物群的宏基因组学以及对[具体研究对象1]和[具体研究对象2]的系统发育研究
Philos Trans R Soc Lond B Biol Sci. 2020 Nov 23;375(1812):20190573. doi: 10.1098/rstb.2019.0573. Epub 2020 Oct 5.
3
Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts.获取和适应超小型寄生减基因组细菌与哺乳动物宿主。
Cell Rep. 2020 Jul 21;32(3):107939. doi: 10.1016/j.celrep.2020.107939.
4
Discovery of a Novel Periodontal Disease-Associated Bacterium.发现一种新型牙周病相关细菌。
Microb Ecol. 2019 Jan;77(1):267-276. doi: 10.1007/s00248-018-1200-6. Epub 2018 Jun 2.

本文引用的文献

1
Microbial species delineation using whole genome sequences.利用全基因组序列进行微生物物种划分。
Nucleic Acids Res. 2015 Aug 18;43(14):6761-71. doi: 10.1093/nar/gkv657. Epub 2015 Jul 6.
2
Advancements toward a systems level understanding of the human oral microbiome.对人类口腔微生物群进行系统层面理解的进展。
Front Cell Infect Microbiol. 2014 Jul 29;4:98. doi: 10.3389/fcimb.2014.00098. eCollection 2014.
3
The personal human oral microbiome obscures the effects of treatment on periodontal disease.个体的人类口腔微生物群掩盖了治疗对牙周病的影响。
PLoS One. 2014 Jan 29;9(1):e86708. doi: 10.1371/journal.pone.0086708. eCollection 2014.
4
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.从嵌合MDA产物中组装单细胞基因组和微型宏基因组。
J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084.
5
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.从医院水槽生物膜中回收的候选门 TM6 基因组为研究这一未培养门提供了基因组见解。
Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. doi: 10.1073/pnas.1219809110. Epub 2013 Jun 10.
6
Periodontal disease and systemic illness: will the evidence ever be enough?牙周病与全身性疾病:证据何时才足够?
Periodontol 2000. 2013 Jun;62(1):271-86. doi: 10.1111/prd.12007.
7
Lessons learned and unlearned in periodontal microbiology.牙周微生物学到的和未学到的教训。
Periodontol 2000. 2013 Jun;62(1):95-162. doi: 10.1111/prd.12010.
8
Risk factors for periodontal disease.牙周病的危险因素。
Periodontol 2000. 2013 Jun;62(1):59-94. doi: 10.1111/j.1600-0757.2012.00457.x.
9
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
10
Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.使用 AMPHORA2 进行细菌和古菌序列的系统发育基因组分析。
Bioinformatics. 2012 Apr 1;28(7):1033-4. doi: 10.1093/bioinformatics/bts079. Epub 2012 Feb 12.