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一种用于动态对比增强磁共振图像分析的开源软件:重新审视UMMPerfusion

An open source software for analysis of dynamic contrast enhanced magnetic resonance images: UMMPerfusion revisited.

作者信息

Zöllner Frank G, Daab Markus, Sourbron Steven P, Schad Lothar R, Schoenberg Stefan O, Weisser Gerald

机构信息

Computer Assisted Clinical Medicine, Medical Faculty Mannheim, Heidelberg University, Theodor-Kutzer-Ufer 1-3, 68167, Mannheim, Germany.

Division of Biomedical Imaging, University of Leeds, Leeds, UK.

出版信息

BMC Med Imaging. 2016 Jan 14;16:7. doi: 10.1186/s12880-016-0109-0.

DOI:10.1186/s12880-016-0109-0
PMID:26767969
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4712457/
Abstract

BACKGROUND

Perfusion imaging has become an important image based tool to derive the physiological information in various applications, like tumor diagnostics and therapy, stroke, (cardio-) vascular diseases, or functional assessment of organs. However, even after 20 years of intense research in this field, perfusion imaging still remains a research tool without a broad clinical usage. One problem is the lack of standardization in technical aspects which have to be considered for successful quantitative evaluation; the second problem is a lack of tools that allow a direct integration into the diagnostic workflow in radiology.

RESULTS

Five compartment models, namely, a one compartment model (1CP), a two compartment exchange (2CXM), a two compartment uptake model (2CUM), a two compartment filtration model (2FM) and eventually the extended Toft's model (ETM) were implemented as plugin for the DICOM workstation OsiriX. Moreover, the plugin has a clean graphical user interface and provides means for quality management during the perfusion data analysis. Based on reference test data, the implementation was validated against a reference implementation. No differences were found in the calculated parameters.

CONCLUSION

We developed open source software to analyse DCE-MRI perfusion data. The software is designed as plugin for the DICOM Workstation OsiriX. It features a clean GUI and provides a simple workflow for data analysis while it could also be seen as a toolbox providing an implementation of several recent compartment models to be applied in research tasks. Integration into the infrastructure of a radiology department is given via OsiriX. Results can be saved automatically and reports generated automatically during data analysis ensure certain quality control.

摘要

背景

灌注成像已成为一种重要的基于图像的工具,可在各种应用中获取生理信息,如肿瘤诊断与治疗、中风、(心血管)疾病或器官功能评估。然而,即使在该领域经过20年的深入研究之后,灌注成像仍然只是一种研究工具,尚未得到广泛的临床应用。一个问题是在技术方面缺乏标准化,而成功进行定量评估必须考虑这些方面;另一个问题是缺乏能够直接集成到放射诊断工作流程中的工具。

结果

五种房室模型,即单房室模型(1CP)、双房室交换模型(2CXM)、双房室摄取模型(2CUM)、双房室滤过模型(2FM)以及最终的扩展托夫特模型(ETM),被实现为DICOM工作站OsiriX的插件。此外,该插件具有简洁的图形用户界面,并在灌注数据分析过程中提供质量管理手段。基于参考测试数据,将该实现与参考实现进行了对比验证。在计算参数方面未发现差异。

结论

我们开发了用于分析DCE-MRI灌注数据的开源软件。该软件被设计为DICOM工作站OsiriX的插件。它具有简洁的图形用户界面,为数据分析提供了简单的工作流程,同时也可被视为一个工具箱,提供了几种近期房室模型的实现,可应用于研究任务。通过OsiriX可实现与放射科基础设施的集成。结果可自动保存,数据分析过程中自动生成的报告确保了一定的质量控制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/8f38c634a62c/12880_2016_109_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/f8267311b101/12880_2016_109_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/bd45b6b64414/12880_2016_109_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/001234138f05/12880_2016_109_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/ffe3f63c61c9/12880_2016_109_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/dd2a3e519564/12880_2016_109_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/2642cf364875/12880_2016_109_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/b5935b37ae55/12880_2016_109_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/15a8650cda2d/12880_2016_109_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/8f38c634a62c/12880_2016_109_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/f8267311b101/12880_2016_109_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/bd45b6b64414/12880_2016_109_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/001234138f05/12880_2016_109_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/ffe3f63c61c9/12880_2016_109_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/dd2a3e519564/12880_2016_109_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/2642cf364875/12880_2016_109_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/b5935b37ae55/12880_2016_109_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/15a8650cda2d/12880_2016_109_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92ea/4712457/8f38c634a62c/12880_2016_109_Fig9_HTML.jpg

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