Golubev A
Department of Biochemistry, Saint-Petersburg State University, Saint Petersburg, Russia.
J Theor Biol. 2016 Mar 21;393:203-17. doi: 10.1016/j.jtbi.2015.12.027. Epub 2016 Jan 15.
A panel of published distributions of cell interdivision times (IDT) comprising 77 datasets related to 16 cell types, some studied under different conditions, was used to evaluate their conformance to the exponentially modified gamma distribution (EMGD) in comparison with distributions suggested for IDT data earlier. Lognormal, gamma, inverse Gaussian, and shifted Weibull and gamma distributions were found to be generally inferior to EMGD. Exponentially modified Gaussian (EMG) performed equally well. Although EMGD or EMG may be worse than some other distributions in specific cases, the reason that IDT distributions must be generated by a common mechanism of the cell cycle makes it unlikely that they differ essentially in different cell types. Therefore, exponentially modified peak functions, such as EMGD or EMG, are most appropriate if the use of a single distribution for IDT data is reasonable. EMGD is also shown to be the best descriptive tool for published data on the distribution of times between the bursts of mRNA synthesis at defined genes in single cells. EMG is inadequate to such data because its Gaussian component markedly extends to the negative time domain. The applicability of EMGD to comparable features of cells and genes behaviors are discussed to support the validity of the transition probability model and to relate the exponential component of EMGD to the times of cell dwelling in the restriction point of the cell cycle.
一组已发表的细胞分裂间隔时间(IDT)分布数据,包含与16种细胞类型相关的77个数据集,其中一些是在不同条件下研究得到的,用于评估它们与指数修正伽马分布(EMGD)的符合程度,并与早期针对IDT数据提出的其他分布进行比较。结果发现对数正态分布、伽马分布、逆高斯分布以及移位威布尔分布和伽马分布通常不如EMGD。指数修正高斯分布(EMG)表现相当。尽管在特定情况下,EMGD或EMG可能比其他一些分布差,但由于IDT分布必定由细胞周期的共同机制产生,所以不同细胞类型的IDT分布本质上不太可能有差异。因此,如果对IDT数据使用单一分布是合理的,那么指数修正峰值函数,如EMGD或EMG,是最合适的。EMGD还被证明是单细胞中特定基因mRNA合成爆发之间时间分布的已发表数据的最佳描述工具。EMG不适用于此类数据,因为其高斯分量明显延伸到负时间域。本文讨论了EMGD在细胞和基因行为可比特征方面的适用性,以支持转移概率模型的有效性,并将EMGD的指数分量与细胞在细胞周期限制点的停留时间联系起来。