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弥合差距:极地和高山微生物学的模型-数据方法

Bridging the divide: a model-data approach to Polar and Alpine microbiology.

作者信息

Bradley James A, Anesio Alexandre M, Arndt Sandra

机构信息

Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, BS8 1SS, UK BRIDGE, School of Geographical Sciences, University of Bristol, BS8 1SS, UK

Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, BS8 1SS, UK.

出版信息

FEMS Microbiol Ecol. 2016 Mar;92(3). doi: 10.1093/femsec/fiw015. Epub 2016 Jan 31.

DOI:10.1093/femsec/fiw015
PMID:26832206
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4765003/
Abstract

Advances in microbial ecology in the cryosphere continue to be driven by empirical approaches including field sampling and laboratory-based analyses. Although mathematical models are commonly used to investigate the physical dynamics of Polar and Alpine regions, they are rarely applied in microbial studies. Yet integrating modelling approaches with ongoing observational and laboratory-based work is ideally suited to Polar and Alpine microbial ecosystems given their harsh environmental and biogeochemical characteristics, simple trophic structures, distinct seasonality, often difficult accessibility, geographical expansiveness and susceptibility to accelerated climate changes. In this opinion paper, we explain how mathematical modelling ideally complements field and laboratory-based analyses. We thus argue that mathematical modelling is a powerful tool for the investigation of these extreme environments and that fully integrated, interdisciplinary model-data approaches could help the Polar and Alpine microbiology community address some of the great research challenges of the 21st century (e.g. assessing global significance and response to climate change). However, a better integration of field and laboratory work with model design and calibration/validation, as well as a stronger focus on quantitative information is required to advance models that can be used to make predictions and upscale processes and fluxes beyond what can be captured by observations alone.

摘要

冰冻圈微生物生态学的进展仍然由包括实地采样和基于实验室分析在内的实证方法推动。虽然数学模型通常用于研究极地和高山地区的物理动态,但它们很少应用于微生物研究。然而,鉴于极地和高山微生物生态系统恶劣的环境和生物地球化学特征、简单的营养结构、明显的季节性、通常难以到达、地域广阔以及易受加速气候变化影响,将建模方法与正在进行的观测和基于实验室的工作相结合非常适合这些生态系统。在这篇观点论文中,我们解释了数学建模如何理想地补充实地和基于实验室的分析。因此,我们认为数学建模是研究这些极端环境的有力工具,完全整合的跨学科模型 - 数据方法可以帮助极地和高山微生物学界应对21世纪的一些重大研究挑战(例如评估全球意义和对气候变化的响应)。然而,需要更好地将实地和实验室工作与模型设计以及校准/验证相结合,并且更加强调定量信息,以推进能够用于进行预测并扩大对仅靠观测无法捕捉的过程和通量的研究范围的模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a31/4765003/f4072115ba27/fiw015fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a31/4765003/45343c520ab5/fiw015fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a31/4765003/f4072115ba27/fiw015fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a31/4765003/45343c520ab5/fiw015fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a31/4765003/f4072115ba27/fiw015fig2.jpg

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本文引用的文献

1
Aerobiology Over Antarctica - A New Initiative for Atmospheric Ecology.南极洲上空的空气生物学——大气生态学的一项新举措。
Front Microbiol. 2016 Feb 16;7:16. doi: 10.3389/fmicb.2016.00016. eCollection 2016.
2
Emerging spatial patterns in Antarctic prokaryotes.南极原核生物中正在出现的空间模式。
Front Microbiol. 2015 Sep 30;6:1058. doi: 10.3389/fmicb.2015.01058. eCollection 2015.
3
Microbial ecology of the cryosphere: sea ice and glacial habitats.冰雪圈微生物生态学:海冰和冰川生境。
Geobiology. 2019 Jan;17(1):43-59. doi: 10.1111/gbi.12313. Epub 2018 Sep 24.
Nat Rev Microbiol. 2015 Nov;13(11):677-90. doi: 10.1038/nrmicro3522. Epub 2015 Sep 7.
4
Metabolic energy-based modelling explains product yielding in anaerobic mixed culture fermentations.基于代谢能量的模型解释了厌氧混合培养发酵中的产物生成。
PLoS One. 2015 May 18;10(5):e0126739. doi: 10.1371/journal.pone.0126739. eCollection 2015.
5
Microbial diversity on Icelandic glaciers and ice caps.冰岛冰川和冰盖上的微生物多样性。
Front Microbiol. 2015 Apr 20;6:307. doi: 10.3389/fmicb.2015.00307. eCollection 2015.
6
Deep groundwater and potential subsurface habitats beneath an Antarctic dry valley.南极干谷下方的深层地下水和潜在地下栖息地。
Nat Commun. 2015 Apr 28;6:6831. doi: 10.1038/ncomms7831.
7
Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes.多年冻土、活动层和热喀斯特泥炭地土壤微生物组的多组学研究。
Nature. 2015 May 14;521(7551):208-12. doi: 10.1038/nature14238. Epub 2015 Mar 4.
8
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession.解析介导微生物演替中随机过程与确定性过程平衡的机制。
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1326-32. doi: 10.1073/pnas.1414261112. Epub 2015 Mar 2.
9
Microbial community composition of transiently wetted Antarctic Dry Valley soils.短暂湿润的南极干谷土壤的微生物群落组成
Front Microbiol. 2015 Jan 28;6:9. doi: 10.3389/fmicb.2015.00009. eCollection 2015.
10
Evidence of in situ microbial activity and sulphidogenesis in perennially sub-0 °C and hypersaline sediments of a high Arctic permafrost spring.北极永久冻土泉常年处于0°C以下且高盐度沉积物中微生物原位活性和硫化作用的证据。
Extremophiles. 2015 Jan;19(1):1-15. doi: 10.1007/s00792-014-0703-4. Epub 2014 Nov 9.