Seol Young-Joo, Lee Tae-Ho, Park Dong-Suk, Kim Chang-Kug
Genomics Division, National Academy of Agricultural Science (NAAS), Jeonju, Korea.
Evol Bioinform Online. 2016 Feb 1;12:51-8. doi: 10.4137/EBO.S34493. eCollection 2016.
The National Agricultural Biotechnology Information Center developed an access portal to search, visualize, and share agricultural genomics data with a focus on South Korean information and resources. The portal features an agricultural biotechnology database containing a wide range of omics data from public and proprietary sources. We collected 28.4 TB of data from 162 agricultural organisms, with 10 types of omics data comprising next-generation sequencing sequence read archive, genome, gene, nucleotide, DNA chip, expressed sequence tag, interactome, protein structure, molecular marker, and single-nucleotide polymorphism datasets. Our genomic resources contain information on five animals, seven plants, and one fungus, which is accessed through a genome browser. We also developed a data submission and analysis system as a web service, with easy-to-use functions and cutting-edge algorithms, including those for handling next-generation sequencing data.
国家农业生物技术信息中心开发了一个访问门户，用于搜索、可视化和共享农业基因组学数据，重点是韩国的信息和资源。该门户设有一个农业生物技术数据库，其中包含来自公共和专有来源的广泛组学数据。我们从162种农业生物中收集了28.4 TB的数据，其中10种组学数据包括下一代测序序列读取存档、基因组、基因、核苷酸、DNA芯片、表达序列标签、相互作用组、蛋白质结构、分子标记和单核苷酸多态性数据集。我们的基因组资源包含有关五种动物、七种植物和一种真菌的信息，可通过基因组浏览器进行访问。我们还开发了一个数据提交和分析系统作为网络服务，具有易于使用的功能和前沿算法，包括处理下一代测序数据的算法。
